heatmapbuilder: heatmapbuilder
In MarianoRuzJurado/RNASeq: A workflow for RNA-Seq analysis.

Description Usage Arguments Details Examples

View source: R/rna_seq_add_functions_for_package.R

Creates heatmaps based on a list to visualize differential expression in sample sets. Differential expressed genes are outfiled in a .xls-file and heatmaps as .pdf-file.

1	heatmapbuilder(collectResults)

collectResults

= a list, with sub lists

collectResults should contain: used differential expression tools (like DESeq2), contrasts of your samples, normalizedcounts, paths to your results folder and the differential expressed genes

Your list should look something like this:

collectResults$DETool$CommonResults$counts
                     $contrasts$folder
                               $diffGenes
                               $DF

DETool= Tool used (e.g. DESeq2), CommonResults = sub list with rawcounts and normalized counts, DF=Data Frame (e.g. output of run_DESeq2)