Description Usage Arguments Value Examples
Throws errors if the initial dataframe of pathogen level data from BioFire database. If check doesn't pass subsequent functions my break in unexpected ways. If error was encountered and then problem solved, run again to see if additional problems are encountered
1 | initial_check(df, target_PouchTitle = "Respiratory_Panel")
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df |
this is the raw dataframe to be fed into subsequent functions starting with the "pre_process" |
target_PouchTitle |
Name of the PouchTitle of interest–insures it is present. |
Either an error if problems are encountered, or "passed check" message
1 2 | initial_check(rp_raw)
initial_check(rp_raw, target_PouchTitle = "Gastro_Intestinal")
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