path_dat: Number of positive detections by pathogen per day

Description Usage Format

Description

Total number positive tests for each pathogen, by Site, date and InstrumentVersion. This data set is just a summary of the fake rp_raw example dataset (see ?turnr::rp_raw). This data set was generated by running calc_count_by_site_inst(co_detection(pre_process(rp_raw))). Mostly just created to be used in examples for functions.

Usage

1

Format

A data frame with 6 variables:

SiteID

Unique ID of the lab

date

date

daily_count

number of positive tests for given pathogen, that day

TargetName

name of pathogen, also 'negative' for no pathogens, or 'co-detection' if more than one pathogen was positive

InstrumentVersion

type of instrument, or 'all' for all InstrumentVersions combined

...


MartinHoldrege/turnr documentation built on May 16, 2020, 10:39 a.m.