API for MathOnco/EvoFreq
Clonal Dynamic Visualizations
| Global functions | |
|---|---|
| add_links | Source code |
| add_origin_mat | Source code |
| animate_evogram | Man page Source code |
| beta_growth_fxn | Source code |
| check_and_update_edges | Source code |
| check_for_missing_links_fnx | Source code |
| check_freq_mat | Source code |
| cmap_hex_list | Man page |
| distribute_x | Source code |
| example.easy.long.edges | Man page |
| example.easy.long.sizes | Man page |
| example.easy.wide | Man page |
| example.easy.wide.with.attributes | Man page |
| example.long.clones | Man page |
| example.long.edges | Man page |
| example.wide | Man page |
| fill_in_gaps | Source code |
| filter_data | Source code |
| filter_edges_at_time | Source code |
| filter_freq_mat | Source code |
| get_all_idx | Source code |
| get_ancestor_idx_evo_freq | Source code |
| get_argname | Source code |
| get_attribute_colors | Source code |
| get_children | Source code |
| get_clone_color | Source code |
| get_colors | Source code |
| get_dendrogram_pos | Source code |
| get_elbow_links | Source code |
| get_evofreq | Man page Source code |
| get_evofreq_labels | Man page Source code |
| get_evogram | Man page Source code |
| get_genomes | Source code |
| get_heirarchy_level | Source code |
| get_initial_d_pos | Source code |
| get_last_idx_above_0 | Source code |
| get_last_idx_at_0 | Source code |
| get_linear_m_and_b | Source code |
| get_mutation_df | Man page Source code |
| get_node_idx | Source code |
| get_pos | Source code |
| get_root_id | Source code |
| get_straight_links | Source code |
| interp_mut_mat | Source code |
| linear_interp_point | Source code |
| long_to_wide_freq_ready | Man page Source code |
| make_pointy | Source code |
| match_d_pos | Source code |
| named2hex | Source code |
| order_clones_at_time | Source code |
| parse_calder | Man page Source code |
| parse_phylowgs | Man page Source code |
| plot_evofreq | Man page Source code |
| plot_evogram | Man page Source code |
| predict_sizes | Source code |
| read.HAL | Man page Source code |
| recenter_parents | Source code |
| rescale_frequencies | Source code |
| rgb2hex | Source code |
| scale_value | Source code |
| scale_values | Source code |
| set_clone_origin_d_pos | Source code |
| smooth_pos | Source code |
| traverse | Source code |
| update_colors | Man page Source code |
