example.wide: Clone information dataset in Wide Format
In MathOnco/EvoFreq: Clonal Dynamic Visualizations

Description Usage Format Source Examples

A dataset from a simulation taken from "Niche engineering drives early passage through an immune bottleneck in progression to colorectal cancer"

1	example.wide

A data frame with 6591 rows and 43 variables:

master_random_seed: Simulation metadata
macrophage_suppression: Simulation metadata
macrophage_growth_benefit: Simulation metadata
pdl1_protection: Simulation metadata
tumor_random_seed: Simulation metadata
tumor_lineage: Simulation metadata
tumor_status: Simulation metadata
onset: Simulation metadata
parent: Simulation metadata
og_parent: Simulation metadata
clone: Simulation metadata
type: Simulation metadata
division_rate: Simulation metadata
n_driver_mutations: Simulation metadata
new_antigenicity: Simulation metadata
og_antigenicity: Simulation metadata
final_antigenicity: Simulation metadata
macrophage: Simulation metadata
pdl1: Simulation metadata
immune_susceptibility: Simulation metadata
detected: Simulation metadata
size_at_time_of_detection: Simulation metadata
X2227: Timepoint
X2257: Timepoint
X2287: Timepoint
X2317: Timepoint
X2347: Timepoint
X2377: Timepoint
X2407: Timepoint
X2437: Timepoint
X2467: Timepoint
X2497: Timepoint
X2527: Timepoint
X2557: Timepoint
X2587: Timepoint
X2617: Timepoint
X2647: Timepoint
X2677: Timepoint
X2707: Timepoint
X2737: Timepoint
X2767: Timepoint
X2797: Timepoint
X2808: Timepoint

https://www.biorxiv.org/content/10.1101/623959v2

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if (require("EvoFreq")) {
example.wide
}

MathOnco/EvoFreq documentation built on Jan. 26, 2022, 7:31 p.m.

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