animate_evogram | animate_evogram View changes in the dendrogram over time. Has... |
cmap_hex_list | Hex codes |
example.easy.long.edges | Clone edges in Easy Long Format |
example.easy.long.sizes | Clone information dataset in Easy Long Format |
example.easy.wide | Clone information dataset in Easy Wide Format |
example.easy.wide.with.attributes | Clone information dataset in Easy Wide Format |
example.long.clones | Clone information dataset in Long Format |
example.long.edges | Clone information dataset in Long Format |
example.wide | Clone information dataset in Wide Format |
get_evofreq | get_evofreq Collect information to plot frequency dynamics |
get_evofreq_labels | get_evofreq_labels |
get_evogram | get_evogram Collect information to plot dendrogram |
get_mutation_df | 'get_mutation_df' Converts sizes to the frequency of the... |
long_to_wide_freq_ready | Convert data in long format to wide format... |
parse_calder | parse_calder Parse Calder outputs to visualize using EvoFreq. |
parse_phylowgs | parse_phylowgs Parse phylowgs outputs to visualize using... |
plot_evofreq | 'plot_evofreq' Plots the frequency dynamics using ggplot. Can... |
plot_evogram | plot_evogram Plot dendrogram |
read.HAL | read.HAL |
update_colors | update_colors Update the colors of clones in the frequency... |
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