API for MathOnco/EvoFreq
Clonal Dynamic Visualizations

Global functions
add_links Source code
add_origin_mat Source code
animate_evogram Man page Source code
beta_growth_fxn Source code
check_and_update_edges Source code
check_for_missing_links_fnx Source code
check_freq_mat Source code
cmap_hex_list Man page
distribute_x Source code
example.easy.long.edges Man page
example.easy.long.sizes Man page
example.easy.wide Man page
example.easy.wide.with.attributes Man page
example.long.clones Man page
example.long.edges Man page
example.wide Man page
fill_in_gaps Source code
filter_data Source code
filter_edges_at_time Source code
filter_freq_mat Source code
get_all_idx Source code
get_ancestor_idx_evo_freq Source code
get_argname Source code
get_attribute_colors Source code
get_children Source code
get_clone_color Source code
get_colors Source code
get_dendrogram_pos Source code
get_elbow_links Source code
get_evofreq Man page Source code
get_evofreq_labels Man page Source code
get_evogram Man page Source code
get_genomes Source code
get_heirarchy_level Source code
get_initial_d_pos Source code
get_last_idx_above_0 Source code
get_last_idx_at_0 Source code
get_linear_m_and_b Source code
get_mutation_df Man page Source code
get_node_idx Source code
get_pos Source code
get_root_id Source code
get_straight_links Source code
interp_mut_mat Source code
linear_interp_point Source code
long_to_wide_freq_ready Man page Source code
make_pointy Source code
match_d_pos Source code
named2hex Source code
order_clones_at_time Source code
parse_calder Man page Source code
parse_phylowgs Man page Source code
plot_evofreq Man page Source code
plot_evogram Man page Source code
predict_sizes Source code
read.HAL Man page Source code
recenter_parents Source code
rescale_frequencies Source code
rgb2hex Source code
scale_value Source code
scale_values Source code
set_clone_origin_d_pos Source code
smooth_pos Source code
traverse Source code
update_colors Man page Source code
MathOnco/EvoFreq documentation built on Oct. 30, 2019, 9:18 p.m.