get_evofreq_labels: get_evofreq_labels
In MathOnco/EvoFreq: Clonal Dynamic Visualizations

Description Usage Arguments Value Examples

get_evofreq_labels

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get_evofreq_labels(freq_frame, apply_labels = FALSE,
  custom_label_text = NULL, evofreq_plot = NULL, clone_list = NULL,
  extant_only = FALSE, line_color = "darkgrey", adj.factor = 10)

`freq_frame`	Properly formatted dataframe from `get_evofreq`.
`apply_labels`	Whether to plot the labels. Must include evofreq_plot if TRUE. Default FALSE.
`custom_label_text`	Custom labels to use (e.g. c("Mutant X","Mutant Y"))
`evofreq_plot`	Plot returned from `plot_evofreq`.
`clone_list`	Only label clones with this id. Passed as a vector.
`extant_only`	Get labels for only the extant clones.
`line_color`	Single color value. Default "black".
`adj.factor`	Value to scale the label and lines by so that they are far enough from the plot. Default value is 10 (a 10th of the distance between max/min at x from max/min across x).

Dataframe containing the necessary coordinates to add labels in the proper locations.

data("example.easy.wide") # Load Data
### Get frequency dataframe
freq_frame <- get_evofreq(example.easy.wide[,seq(3,10)], example.easy.wide$clones, example.easy.wide$parents, clone_cmap = "magma")
evofreq_plot <- plot_evofreq(freq_frame)
clone_labels <- get_evofreq_labels(freq_frame, extant_only=FALSE)

### Set evofreq_plot and apply_labels = TRUE to get a labeled plot back
get_evofreq_labels(freq_frame, extant_only=FALSE, evofreq_plot = evofreq_plot, apply_labels = TRUE)