Man pages for MathOnco/EvoFreq
Clonal Dynamic Visualizations
| animate_evogram | animate_evogram View changes in the dendrogram over time. Has... |
| cmap_hex_list | Hex codes |
| example.easy.long.edges | Clone edges in Easy Long Format |
| example.easy.long.sizes | Clone information dataset in Easy Long Format |
| example.easy.wide | Clone information dataset in Easy Wide Format |
| example.easy.wide.with.attributes | Clone information dataset in Easy Wide Format |
| example.long.clones | Clone information dataset in Long Format |
| example.long.edges | Clone information dataset in Long Format |
| example.wide | Clone information dataset in Wide Format |
| get_evofreq | get_evofreq Collect information to plot frequency dynamics |
| get_evofreq_labels | get_evofreq_labels |
| get_evogram | get_evogram Collect information to plot dendrogram |
| get_mutation_df | 'get_mutation_df' Converts sizes to the frequency of the... |
| long_to_wide_freq_ready | Convert data in long format to wide format... |
| parse_calder | parse_calder Parse Calder outputs to visualize using EvoFreq. |
| parse_phylowgs | parse_phylowgs Parse phylowgs outputs to visualize using... |
| plot_evofreq | 'plot_evofreq' Plots the frequency dynamics using ggplot. Can... |
| plot_evogram | plot_evogram Plot dendrogram |
| read.HAL | read.HAL |
| update_colors | update_colors Update the colors of clones in the frequency... |
