API for Mathelab/ALTRE
Workflow for Identifying Regulatory Elements from Chromatin Accessibility Assay Data
| Global functions | |
|---|---|
| ALTRE | Man page |
| ALTRE-package | Man page |
| categAltrePeaks | Man page |
| combineAnnotatePeaks | Man page |
| comparePeaksAltre | Man page |
| countanalysis | Man page |
| getConsensusPeaks | Man page |
| getCounts | Man page |
| getCountsFast | Man page |
| getTSS | Man page |
| grangestodataframe | Man page |
| loadBamFiles | Man page |
| loadBedFiles | Man page |
| loadCSVFile | Man page |
| mergeclosepeaks | Man page |
| plotCombineAnnotatePeaks | Man page |
| plotCompareMethods | Man page |
| plotCompareMethodsAll | Man page |
| plotConsensusPeaks | Man page |
| plotCountAnalysis | Man page |
| plotDistCountAnalysis | Man page |
| plotGREATenrich | Man page |
| plotGetCounts | Man page |
| processPathways | Man page |
| runGREAT | Man page |
| runShinyApp | Man page |
| statscombineannotate | Man page |
| tssannotgrange | Man page |
| writeBedFile | Man page |
| writeCompareRE | Man page |
| writeConsensusRE | Man page |
| writeGREATpath | Man page |
