loadBedFiles: Read in BED Files
In Mathelab/ALTRE: Workflow for Identifying Regulatory Elements from Chromatin Accessibility Assay Data
Description
Usage
Arguments
Value
Examples
Description
Read in the peak files (BED format) with the loadBedFiles() function. Only
the first three columns (chr, start, end) of the peak files are required an
read in. Additional columns are allowed but ignored.
Usage
1
loadBedFiles(csvfile)
Arguments
csvfile
csvfile from loadCSVFile function
Value
coordinates of peak files
Examples
1
2
3
4
5
## Not run:
csvfile <- loadCSVFile("DNAseEncodeExample.csv")
samplePeaks <- loadBedFiles(csvfile)
## End(Not run)
Mathelab/ALTRE documentation built on May 7, 2019, 3:41 p.m.
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Description Usage Arguments Value Examples
Description
Read in the peak files (BED format) with the loadBedFiles() function. Only the first three columns (chr, start, end) of the peak files are required an read in. Additional columns are allowed but ignored.
Usage
1 | loadBedFiles(csvfile)
|
Arguments
csvfile |
csvfile from loadCSVFile function |
Value
coordinates of peak files
Examples
1 2 3 4 5 | ## Not run:
csvfile <- loadCSVFile("DNAseEncodeExample.csv")
samplePeaks <- loadBedFiles(csvfile)
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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