loadCSVFile: Read in CSV file

In Mathelab/ALTRE: Workflow for Identifying Regulatory Elements from Chromatin Accessibility Assay Data

Description

The metadata associated with data files to be analyzed in ALTRE is supplied as a CSV file. The software will automatically retrieve the file path of input CSV so it is important that all analysis files are in the same folder as CSV file. If there are greater than two sample types in the file, two samples must be selected for analysis using the paramaters sample1 and sample2. This software can only compare two samples at a time.

Usage

loadCSVFile(csvPath, sample1 = NULL, sample2 = NULL)

Arguments

csvPath	csvPath
sample1	optional, select first sample to use if >2 samples are in csv file
sample2	optional, select second sample to use if >2 samples are in csv file

Value

dataframe of CSV file

Examples

## Not run: 
csvfile <- loadCSVFile(csvPath = "DNaseEncodeExample.csv")

## End(Not run)

Mathelab/ALTRE documentation built on May 7, 2019, 3:41 p.m.