Mathelab/ALTRE: Workflow for Identifying Regulatory Elements from Chromatin Accessibility Assay Data
This workflow takes alignment data and hotspot calls from assays of open chromatin (ATAC-seq, DNase-seq, and FAIRE-seq) and identifies candidate regulatory elements (e.g. TSS-distal and TSS-proximal) that differ across cell and tissue type.
Getting started
Browse package contents
Package details |
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| Bioconductor views | Annotation AnnotationData FunctionalAnnotation Software Visualization |
| Maintainer | |
| License | GPL-2 |
| Version | 0.99.0 |
| URL | https://github.com/Mathelab/ALTRE |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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