Files in Meiomap/SureTypeSCR
Library for (single-cell) SNP array processing
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/calculate_ma.R
R/callrate.R
R/configure_iaap.R
R/create_dataobject_from_frame.R
R/create_from_frame.R
R/getGEO_and_folder_in.R
R/get_multiind_df.R
R/get_simpleind_df.R
R/get_threshold.R
R/idat_to_gtc.R
R/plot_ma.R
R/plot_pca.R
R/predict_suretype.R
R/preprocess_pca.R
R/scEls.R
R/scTrain.R
R/scbasic.R
R/scload.R
R/scpredict.R
R/set_threshold.R
R/suretype_model.R
R/write_samplesheet.R
R/zzz.R
README.md
docs/SureTypeSCR-manual.pdf
docs/SureTypeSCR-tutorial_files/figure-html/After_classification-1.png
docs/SureTypeSCR-tutorial_files/figure-html/MAtransform-1.png
docs/SureTypeSCR-tutorial_files/figure-html/pca-1.png
docs/index.html
inst/doc/SureTypeSCR-manual.pdf
inst/doc/SureTypeSCR-tutorial.html
inst/doc/SureTypeSCR-tutorial_files/figure-html/After_classification-1.png
inst/doc/SureTypeSCR-tutorial_files/figure-html/MAtransform-1.png
inst/doc/SureTypeSCR-tutorial_files/figure-html/pca-1.png
inst/files/GSE19247_example.csv
inst/files/GTCs/4299791135_R01C01.gtc
inst/files/GTCs/4299791135_R01C02.gtc
inst/files/HumanCytoSNP-12v2_H.bpm
inst/files/HumanCytoSNP-12v2_H.egt
inst/files/rf.zip
man/calculate_ma.Rd
man/callrate.Rd
man/configure_iaap.Rd
man/create_dataobject_from_frame.Rd
man/create_from_frame.Rd
man/getGEO_and_folder_in.Rd
man/get_multiind_df.Rd
man/get_simpleind_df.Rd
man/get_threshold.Rd
man/idat_to_gtc.Rd
man/plot_ma.Rd
man/plot_pca.Rd
man/predict_suretype.Rd
man/preprocess_pca.Rd
man/scEls.Rd
man/scTrain.Rd
man/scbasic.Rd
man/scload.Rd
man/scpredict.Rd
man/set_threshold.Rd
man/suretype_model.Rd
man/write_samplesheet.Rd
vignettes/SureTypeSCR-tutorial.Rmd
