Files in MetClassNet/MetClassNetR
Create and analize networks built from metabolomics Data
.DS_Store
.Rbuildignore
.github/.gitignore
.github/workflows/check-bioc.yml
.github/workflows/pkgdown.yaml
.github/workflows/test-coverage.yaml
.gitignore
DESCRIPTION
MetClassNetR.Rproj
NAMESPACE
R/MultiLayerFunctions.R
R/NetworkComparisonFunctions.R
R/check.R
R/export2gml.R
R/get_classification_chemont.R
R/mapMetToGSMN.R
R/qfeat.R
R/read.R
R/spec.R
README.md
inst/Dockerfile
inst/Dockerfile-base
inst/Python/cleanMetaboliteTable.py
inst/Python/metabolomics2network-master/.gitignore
inst/Python/metabolomics2network-master/CONTRIBUTING.md
inst/Python/metabolomics2network-master/LICENSE.md
inst/Python/metabolomics2network-master/Mapping.py
inst/Python/metabolomics2network-master/Parse.py
inst/Python/metabolomics2network-master/README.md
inst/Python/metabolomics2network-master/chebi_graph.py
inst/Python/metabolomics2network-master/metabolomics2network.py
inst/Python/metabolomics2network-master/outputs.py
inst/Python/metabolomics2network-master/requirements.txt
inst/Python/metabolomics2network-master/tests/test_chebi_graph.py
inst/Python/metabolomics2network-master/tests/test_integration_mapping_json.py
inst/Python/metabolomics2network-master/tests/test_mapping.py
inst/extdata/Example_Coverage/ChemOnt_2_1.obo
inst/extdata/Example_Coverage/chebiId_inchi.tsv
inst/extdata/Example_Coverage/data_tibble.Rdata
inst/extdata/Example_Coverage/example_smiles.csv
inst/extdata/Example_Coverage/fig_example_chemont_coverage_circleplot.pdf
inst/extdata/Example_Coverage/fig_example_chemont_coverage_partitionstack_labelled.pdf
inst/extdata/Example_Coverage/fig_example_chemont_coverage_sunburst.pdf
inst/extdata/Example_Coverage/fig_example_chemont_coverage_tree.pdf
inst/extdata/Example_Coverage/iHY3410_Compound-SBtab.tsv
inst/extdata/Example_Coverage/network_tibble.Rdata
inst/extdata/MTBLS1586/Metabolomics2NetworksData/IdentifiedMet_MTBLS1586_LC-MS_positive_reverse-phase_metabolite_profiling_v2_maf.tsv
inst/extdata/MTBLS1586/Metabolomics2NetworksData/JsonConf.txt
inst/extdata/MTBLS1586/Metabolomics2NetworksData/Result_MTBLS1586_LC-MS_positive_reverse-phase_metabolite_profiling_v2_maf.txt
inst/extdata/MTBLS1586/Metabolomics2NetworksData/WormJamMetWithMasses.tsv
inst/extdata/MTBLS1586/WormJam-2022-09-16T15-52_CompoundGraph.gml
inst/extdata/MTBLS1586/WormJam-GEM-20190101_L3_no-side_no-comp.gml
inst/extdata/MTBLS1586/WormJamMet_2019.tsv
inst/extdata/MTBLS1586/a_MTBLS1586_LC-MS_negative_reverse-phase_metabolite_profiling.txt
inst/extdata/MTBLS1586/a_MTBLS1586_LC-MS_positive_reverse-phase_metabolite_profiling.txt
inst/extdata/MTBLS1586/i_Investigation.txt
inst/extdata/MTBLS1586/m_MTBLS1586_LC-MS_negative_reverse-phase_metabolite_profiling_v2_maf.tsv
inst/extdata/MTBLS1586/m_MTBLS1586_LC-MS_positive_reverse-phase_metabolite_profiling_v2_maf.tsv
inst/extdata/MTBLS1586/ms2_MTBLS1586_LC-MS_negative_reverse-phase_metabolite_profiling.mgf
inst/extdata/MTBLS1586/ms2_MTBLS1586_LC-MS_positive_reverse-phase_metabolite_profiling.mgf
inst/extdata/MTBLS1586/s_MTBLS1586.txt
inst/extdata/MTBLS1586/transformations_MTBLS1586.csv
inst/install.R
man/buildExpNet.Rd
man/calculNetStats.Rd
man/calculateMultiLayerStats.Rd
man/calculateOverlap.Rd
man/dot-mapMetToGSMN_inchikey.Rd
man/dot-mapMetToGSMN_metabolomics2network.Rd
man/exportAttributes2gml.Rd
man/exportNet2gml.Rd
man/getOverlappingNodes.Rd
man/loadInputData.Rd
man/makeMultiLayer.Rd
man/makeToyNet.Rd
man/mapMetToGSMN.Rd
man/printStatsPlots.Rd
man/qfeat_homol.Rd
man/qfeat_statistical.Rd
man/qfeat_structural.Rd
man/readNet.Rd
man/readmzTab.Rd
man/spec_molNetwork.Rd
man/writeMultiLayer.Rd
vignettes/.DS_Store
vignettes/Coverage.Rmd
vignettes/MTBLS1582.Rmd
vignettes/MTBLS1586.Rmd
vignettes/Makefile
vignettes/MappingComparison.Rmd
vignettes/MultiLayerNetwork.Rmd
vignettes/NetworkComparison.Rmd
