calculNetStats: Calculate, create a table and plot statistics

In MetClassNet/MetClassNetR: Create and analize networks built from metabolomics Data

Calculate, create a table and plot statistics

Description

The function calculNetStats serves to calculate, create a table and plot the following statistics:

• Density (no self loops are considered)

• Diameter (if there is more than one connected component, the largest diameter will be returned, independently of the size of the connected component)

• Average degree

• Average path length

• Clustering coefficient (the networks are considered as undirected) It also plots the degree distribution, and upset plots of the overlap of nodes and edges reads all the networks stored in a given directory

Usage

calculNetStats(net)

Arguments

net	list, igraph objects, as returned by readNet()

Value

Data frame with the statistics

Author(s)

Elva Novoa, [e-mail]

Examples

# See the NetworkComparison vignette

MetClassNet/MetClassNetR documentation built on June 30, 2023, 2:12 p.m.