exportAttributes2gml: Create a network and export to gml from adjacency list

In MetClassNet/MetClassNetR: Create and analize networks built from metabolomics Data

Create a network and export to gml from adjacency list

Description

The function exportAttributes2gml creates a network from adjacency lists. The gml is saved in the current working directory having a selected name (name). All or selected edge attributes may be selected using the parameter select.

Usage

exportAttributes2gml(x, file, select = F, anno, ...)

Arguments

x	data.frame adjacency list having Row and Col in the first two columns and additional (edge) attributes in following columns.
file	character, the name which the gml should have, e.g. "mz" produces the file 'mz.gml' in the current working directory.
select	character, the default is FALSE and returns a gml having edge attributes of all availabe columns of x. A character value or string may be used to select one ore more columns by their columnnames that should be saved as edge attributes.

Details

´exportNet2gml uses adjacency matrices to create first a network and then saving it as gml in the current working directory. The name of the gml file is selected by the User with the file parameter. The networks contains the feature ID's as nodes. The edges contains corresponding source feature ID (sourceID) and target feature ID (targetID) and either all column attributes as additional edge attributes or selected ones if select was used. names contains RT, m/z and manual Annotations that will be stored as node attributes

Value

.gml file saved in current working directory with selected name using file .

Author(s)

Liesa Salzer, [e-mail]

Examples

 ######  example to be added!

MetClassNet/MetClassNetR documentation built on June 30, 2023, 2:12 p.m.