Description Usage Arguments Details Value
This function is to calculate posterior predictive distribution (delta interval) of each of the proteins for each patient
1 | getPPD(pd, delta)
|
pd |
the pdlist output from getBMS |
delta |
a cutoff for patient-specific activation status for a protein |
To determine the activation status of a protein, we compute the posterior probabilities of the protein to lie in the delta-interval around zero (neutral), to be greater than delta, (activated) or less than -delta (suppressed).
results |
a matrix includes all the patient-specific results, samplename, fitted value, sd, positive prob. (activated), negative prob. (suppressed), neutral prob., and activation status |
pd |
an object from pred.density |
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