ppi: Pathway information and Protein-Protein interactions from...

In MinJinHa/PRECISE: Personalized Cancer-specific Integrated Network Estimation

Usage

data("ppi")

Format

The format is: List of 2 $ pathwaydat: chr [1:87, 1:3] "Apoptosis" "Apoptosis" "Apoptosis" "Apoptosis" ... ..- attr(*, "dimnames")=List of 2 .. ..$ : NULL .. ..$ : chr [1:3] "Pathway_v20150123" "Protein" "gene" $ ppi :List of 12 ..$ Apoptosis : chr [1:70, 1:3] "BIRC2" "BIRC2" "BIRC2" "BIRC2" ... ..$ Cell cycle : chr [1:42, 1:3] "CDKN1B" "CDKN1B" "CDKN1B" "CDKN1B" ... ..$ DNA damage response : chr [1:90, 1:3] "XRCC1" "XRCC1" "XRCC1" "XRCC1" ... ..$ EMT : chr [1:30, 1:3] "SERPINE1" "SERPINE1" "SERPINE1" "SERPINE1" ... ..$ Hormone receptor : chr [1:6, 1:3] "ESR1" "ESR1" "PGR" "PGR" ... ..$ Hormone signaling (Breast): chr [1:2, 1:3] "BCL2" "GATA3" "GATA3" "BCL2" ... ..$ PI3K/AKT : chr [1:74, 1:3] "TSC2" "TSC2" "TSC2" "TSC2" ... ..$ RAS/MAPK : chr [1:84, 1:3] "MAPK1" "MAPK1" "MAPK1" "MAPK1" ... ..$ RTK : chr [1:20, 1:3] "ERBB3" "ERBB3" "ERBB3" "ERBB3" ... ..$ TSC/mTOR : chr [1:18, 1:3] "RPS6KB1" "RPS6KB1" "RPS6KB1" "RPS6KB1" ... ..$ Breast reactive : chr [1:28, 1:3] "GAPDH" "GAPDH" "GAPDH" "GAPDH" ... ..$ Core reactive : chr [1:10, 1:3] "CDH1" "CDH1" "CDH1" "CAV1" ...

MinJinHa/PRECISE documentation built on May 4, 2019, 1:07 p.m.