getPRECISE: getPRECISE
In MinJinHa/PRECISE: Personalized Cancer-specific Integrated Network Estimation

Description Usage Arguments Details Value

This function is to calculate PRECISE network and score for all patients

1	getPRECISE(outlist, pdlist, nodes, delta)

`outlist`	the outlast object from getBMS
`pdlist`	the pdlist object from getBMS
`nodes`	node names
`delta`	a cutoff for patient-specific activation status for a protein

To determine the activation status of a protein, we compute the posterior probabilities of the protein to lie in the delta-interval around zero (neutral), to be greater than delta, (activated) or less than -delta (suppressed).

`net`	n x p matrix for node statuses, activated(1), suppressed(-1), or neutral(0)
`net.status`	length n vector for network statuses, activated (1), suppressed (-1) or neutral (0)
`score.mat`	n x 3 matrix for network scores for activated (first column), suppressed (second column), and neutral (third column)
`samplename`	length n vector for sample names. all other objects are in this order