KEGGnet.mat: Universal KEGG pathway Gene Network
In Minzhe/DIGREsyn: Drug Induced Genomic Residual Effect (DIGRE) model for predicting drug pair synergistic score
Description
Usage
Format
Details
Description
A matrix contains the global pathway (GP) gene-gene interaction network merged from KEGG pathway database.
Usage
1
Format
An object of class matrix with 2709 rows and 2709 columns.
Details
We selected KEGG pathways belonging to genetic information processing, environmental
information processing, cellular processing, and cancer disease. From this set of selected pathways we removed
any pathway with fewer than 10 edges. Finally we merged the remaining 32 KEGG pathways into a global pathway (GP)
which included 11642 interactions among 2322 genes.
Minzhe/DIGREsyn documentation built on May 7, 2019, 4:58 p.m.
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Description Usage Format Details
Description
A matrix contains the global pathway (GP) gene-gene interaction network merged from KEGG pathway database.
Usage
1 |
Format
An object of class matrix with 2709 rows and 2709 columns.
Details
We selected KEGG pathways belonging to genetic information processing, environmental information processing, cellular processing, and cancer disease. From this set of selected pathways we removed any pathway with fewer than 10 edges. Finally we merged the remaining 32 KEGG pathways into a global pathway (GP) which included 11642 interactions among 2322 genes.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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