NEWS.md

In MoBiodiv/mobr: Measurement of Biodiversity

version 2.0.2

change for CRAN

• remove sort on a data.frame from the function plot_abu which does not change how this function behaves but adheres to CRAN standards.

version 2.0.1

new features

• ref_level can be specified in get_mob_stats, plot_rarefaction and plot_sad which allows for the reference (i.e., control) group to be specified which all others are compared to. This is similar to the implementation in the function get_delta_stats

minor bug fixes

• typo in test_rarefaction.R
• typo in get_mob_stats documentation

version 2.0.0

new features

• Gradient multi-scale mob method added to the function get_delta_stats as described in McGlinn et al. (2020
• Added a new k-nearest neighbor algorithm for the spatial sample based rarefaction curve (sSBR)
• ggplot integrated into plotting method for get_delta_stats -> plot.mob_out
• Added automated tests
• Improved documentation throughout the package

bug fixes

• Function sphere_dist did not appear to be calculating great circle distances from latitude and longitude coordinates correctly using the Haversine formula. This was corrected with a new function this is correct according to comparisons with fields::rdist.earth and geosphere::distHaversine.

omitted feature

• Removed the function overlap_effects which provided an overlapped image of the three components SAD, N, and agg across scale. This may be added back in the future

code refactoring

• Refactored code surrounding the get_delta_stats function which computes the differences in richness across all possible scales.
• Refactoring was primarily accomplished by integrating in the tidyverse tools which should make the code easier to understand and follow
• Computational time has increased as the tidyverse tools are not necessarily the most computationally efficient solutions

version 1.0.0

• provided core functionality of mob tools described in McGlinn et al. (2019) and Chase et al. (2018)

MoBiodiv/mobr documentation built on Jan. 31, 2024, 6:15 p.m.