flowcell_lane_table: Fetch the flowcell lane table

In Molmed/projmanr: R package for interfacing with the ProjMan database at the SNP&SEQ Technology Platform

Description

Fetch the flowcell lane table

Usage

flowcell_lane_table(conn)

Arguments

conn	a connection object

Value

The format of the table looks like: flowcell_id lane_num read_num raw_density pf_density error_rate raw_clusters pf_clusters cycles pct_q30 mean_q delivered <chr> <int> <int> <dbl> <dbl> <dbl> <dbl> <dbl> <int> <dbl> <dbl> <int> 1 000000000-A0KD9 1 1 864521.0 696930.8 0.65 5871614 4733350 150 0.8453360 33.12884 1 2 000000000-A0KD9 1 2 864521.0 696930.8 1.08 5871614 4733350 150 0.7515980 30.17472 1 3 000000000-A0WUK 1 1 1272872.1 1018724.9 0.57 9332511 7469194 150 0.8728759 33.96945 1 4 000000000-A0WUK 1 2 1272872.1 1018724.9 2.08 9332511 7469194 150 0.7391021 29.90063 1 5 000000000-A0Y09 1 1 965732.0 843288.6 0.54 7462029 6516029 150 0.8857051 34.15779 1 6 000000000-A0Y09 1 2 965732.0 843288.6 1.28 7462029 6516029 150 0.7526702 30.16574 1 7 000000000-A14LW 1 1 1022702.9 862672.0 0.57 7660272 6461573 150 0.9083131 35.40900 1

Molmed/projmanr documentation built on May 7, 2019, 4:59 p.m.