sample_table: Fetch the sample results table

In Molmed/projmanr: R package for interfacing with the ProjMan database at the SNP&SEQ Technology Platform

Description

Fetch the sample results table

Usage

sample_table(conn)

Arguments

conn	a connection object

Value

The format of the table looks like this: flowcell_id project_id sample_name tag_seq lane_num read_num cycles pct_lane pf_clusters pct_q30 pct_tag_err library_name mean_q <chr> <chr> <chr> <chr> <int> <int> <int> <dbl> <dbl> <dbl> <dbl> <chr> <dbl> 1 000000000-A0KD9 LD-0049 15890 CTCGGT 1 1 150 15.806417 748173 85.32888 3.932513 33.37124 2 000000000-A0KD9 LD-0049 19540 TTACGG 1 1 150 13.646423 645933 84.84964 2.017237 33.24309 3 000000000-A0KD9 LD-0049 22221 GAGTAT 1 1 150 9.311397 440741 85.38124 7.834760 33.38419 4 000000000-A0KD9 LD-0049 26291 GCGTCC 1 1 150 16.277901 770490 84.83561 2.805617 33.24936 5 000000000-A0KD9 LD-0049 27403 ATATAC 1 1 150 20.664413 978119 84.94376 1.611051 33.26583

Molmed/projmanr documentation built on May 7, 2019, 4:59 p.m.