Man pages for MonashBioinformaticsPlatform/varistran
Variance Stabilizing Transformations appropriate for RNA-Seq expression data
| call_ui | Call object with "request" if it is callable. |
| composable_shiny_app | Composable Shiny App. |
| ensure_reactable | Flexible specification of parameters to shiny apps. |
| ensure_reactive | Make a value reactive if it is not already reactive. |
| heatmap_grob | A grob for heatmaps. |
| make_ordering | Make an object representing an ordering, usually from a... |
| ordering_grob | Grob to display an ordering as a dendrogram. |
| plot_biplot | Biplot of expression data |
| plot_heatmap | Plot a heatmap. |
| plot_stability | Stability plot. |
| run_as_gadget | Run a composable shiny app as a gadget. |
| samesum_log2_norm | Normalized log2 counts using samesum method |
| shiny_biplot | Shiny wrapper for plot_biplot |
| shiny_filter | Shiny component to filter rows and columns a matrix. |
| shiny_heatmap | Shiny wrapper for plot_heatmap |
| shiny_mds_plot | Shiny wrapper for limma's MDS plot |
| shiny_plot | Shiny plot. |
| shiny_report | Shiny report |
| shiny_stability | Shiny wrapper for plot_stability |
| shiny_vst | Shiny component to describe the output of a call to vst. |
| shrinktext_grob | A collection of horizontal labels which shrink if they get... |
| signed_colors | A red-blue palette suitable for signed data. |
| unsigned_colors | A palette from cool to hot. |
| varistran_grob | Make a grob better. |
| vertical_shrinktext_grob | A collection of vertical labels which shrink if they get too... |
| vst | Variance Stabilizing Transformation |
| vst_advice | Advise how VST will transform data |
