make_ordering: Make an object representing an ordering, usually from a...
In MonashBioinformaticsPlatform/varistran: Variance Stabilizing Transformations appropriate for RNA-Seq expression data
Description
Performs hierarchical clustering, and then further refines the order using the seriation library.
Usage
1
make_ordering(mat, enable = TRUE, fast = FALSE)
Arguments
mat
Matrix suitably transformed so distances between rows are meaningful.
enable
If false, don't perform clustering.
fast
If true, just order rows with a simple one dimensional PCA.
MonashBioinformaticsPlatform/varistran documentation built on March 21, 2020, 3:20 p.m.
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Description
Performs hierarchical clustering, and then further refines the order using the seriation library.
Usage
1 | make_ordering(mat, enable = TRUE, fast = FALSE)
|
Arguments
mat |
Matrix suitably transformed so distances between rows are meaningful. |
enable |
If false, don't perform clustering. |
fast |
If true, just order rows with a simple one dimensional PCA. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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