anatomySliceIndicator: Add a slice indicator

In Mouse-Imaging-Centre/MRIcrotome: Visualization Tools for 3D Volumes

Description

Adds an indicator of the slices used in the slice series, displayed on top of an anatomy slice.

Usage

anatomySliceIndicator(ssm, volume, low, high, dimension = NULL,
  slice = NULL, col = gray.colors(255, start = 0),
  lineColour = "green")

Arguments

ssm	The slice series info, usually passed along the pipe and specified by the user
volume	3D matrix representing the volume from which to draw the background slice.
low	Low end of colour for background slice.
high	High end of colour for background slice.
dimension	Dimension to use for background slice. Will pick sensible default if NULL.
slice	Slice number to use for background slice. Will pick sensible default if NULL.
col	Colour of the background slice. Defaults to gray.
lineColour	The colour of the slice indicator lines. Defaults to green.

Value

The ssm object augmented with a sliceIndicator

Examples

## Not run: 
sliceSeries(nrow=5, begin=150, end=250) %>%
  anatomy(anatVol, low=700, high=1400) %>%
  overlay(stats, 2, 6, symmetric = T, alpha=0.1) %>%
  legend("t-statistics") %>%
  anatomySliceIndicator(anatVol, 700, 1400) %>%
  draw()

## End(Not run)

Mouse-Imaging-Centre/MRIcrotome documentation built on Feb. 27, 2020, 1:31 p.m.