sliceSeries: Initialize a slice series

In Mouse-Imaging-Centre/MRIcrotome: Visualization Tools for 3D Volumes

Description

Starts a new slices series, sets dimensions, slices to use, and rows and columns.

Usage

sliceSeries(ssm = NULL, slices = NULL, nrow = NULL, ncol = NULL,
  dimension = NULL, begin = NULL, end = NULL)

Arguments

ssm	Provided as part of an ongoing pipe, not usually specified by user
slices	A vector of integers representing which slices to use. Can be NULL, in which case nrow and ncol together with begin and end are used.
nrow	Rows in the slice series. Set to 1 if NULL and ncol specified.
ncol	Columns in the slice series. Set to 1 if NULL and nrow specified.
dimension	Dimension as integer (1, 2, or 3) for slice series.
begin	First slice. Can be NULL if slices explicitly specified.
end	Last slice. Can be NULL if slices explicitly specified.

Value

Returns the slices series info for passing along the pipe.

Examples

## Not run: 
sliceSeries(nrow = 1, begin=200, end=300) %>%
  anatomy(anatVol, low=700, high=1400) %>%
  overlay(stats, low=2, high=6, symmetric = T) %>%
  legend("t-statistics") %>%
  draw()

## End(Not run)

Mouse-Imaging-Centre/MRIcrotome documentation built on Feb. 27, 2020, 1:31 p.m.