contourSliceIndicator: Add a slice indicator

In Mouse-Imaging-Centre/MRIcrotome: Visualization Tools for 3D Volumes

Description

Adds an indicator of the slices used in the slice series, displayed on top of one or more contours.

Usage

contourSliceIndicator(ssm, volume, levels, dimension = NULL,
  slice = NULL, col = "red", lty = 1, lwd = 1,
  lineColour = "black")

Arguments

ssm	The slice series info, usually passed along the pipe and specified by the user
volume	3D matrix representing the volume from which to draw the contours.
levels	Levels at which to draw contours - a single number or a vector.
dimension	Dimension to use for contours. Will pick sensible default if NULL.
slice	Slice number to use for contours. Will pick sensible default if NULL.
col	The colour(s) for the contour(s). Defaults to red.
lty	The line type(s) for the contour(s). Defaults to 1.
lwd	The line width(s) for the contour(s). Defaults to 1.
lineColour	The colour for the slice indicator lines. Defaults to black.

Value

The ssm augmented with a contour slice indication

Examples

## Not run: 
sliceSeries(nrow=5, begin=150, end=250) %>%
  anatomy(anatVol, low=700, high=1400) %>%
  overlay(stats, 2, 6, symmetric = T, alpha=0.1) %>%
  legend("t-statistics") %>%
  contourSliceIndicator(anatVol, c(700, 1400)) %>%
  draw()

## End(Not run)

Mouse-Imaging-Centre/MRIcrotome documentation built on Feb. 27, 2020, 1:31 p.m.