civet.CreateBrainViewROI: civet.CreateBrainViewROI

In Mouse-Imaging-Centre/RMINC: Statistical Tools for Medical Imaging NetCDF (MINC) Files

civet.CreateBrainViewROI

Description

Create a brainview file of a specific ROI

Usage

civet.CreateBrainViewROI(
  atlasFile,
  atlasVertices,
  region,
  civetVersion = "1.1.12"
)

Arguments

atlasFile	File with Atlas label (string-label(int)) mappings
atlasVertices	File with vertex label(int) mappings
region	Region to plot -> Must match name in atlas file exactly
civetVersion	Version of CIVET

Details

Create a .txt file that can be overlaid unto the model template (usually in the CIVET models directory) Currently only CIVET version 1.1.12 is supported.

See Also

civet.CreateBrainViewFile

Examples

## Not run: 
getRMINCTestData() 
civet.CreateBrainViewROI("/tmp/rminctestdata/AAL.csv",
                         "/tmp/rminctestdata/AAL_atlas_left.txt",
                         "Left Insula")
q()
#(The .txt file is written in the working directory and can be viewed via the command)
#brain-view2 $CIVET_DIR/models/surf_reg_model_left.obj ./LeftInsula.txt

## End(Not run)

Mouse-Imaging-Centre/RMINC documentation built on Nov. 12, 2022, 1:50 p.m.