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Statistical Tools for Medical Imaging NetCDF (MINC) Files

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INSTALL

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Makefile

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R/RMINC.R R/RcppExports.R R/civet.R R/effectsize.R R/minc_FDR.R R/minc_anatomy.R R/minc_graphs.R R/minc_hierarchical_anatomy.R R/minc_interface.R R/minc_lmer.R R/minc_misc.R R/minc_model_selection.R R/minc_parallel.R R/minc_peaks.R R/minc_shiny.R R/minc_vertex_statistics.R R/minc_vis2D.R R/minc_vis3D.R R/minc_voxel_statistics.R R/smoothing_on_manifolds.R

R/sysdata.rda

README

RMINC.Rproj

_config.yml

_pkgdown.yml

cleanup

configure

configure.ac

docs/LICENSE-text.html

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docs/pkgdown.css

docs/pkgdown.js

docs/pkgdown.yml

docs/reference/AICc.html

docs/reference/RMINC.html

docs/reference/RMINC_MASKED_VALUE.html

docs/reference/addVolumesToHierarchy.html

docs/reference/add_colour_bar.html

docs/reference/add_opacity.html

docs/reference/anatAnova.html

docs/reference/anatApply.html

docs/reference/anatCombineStructures.html

docs/reference/anatCreateVolume.html

docs/reference/anatFDR.html

docs/reference/anatGetAll.html

docs/reference/anatGetAll_old.html

docs/reference/anatLm.html

docs/reference/anatLmer.html

docs/reference/anatLmerEstimateDF.html

docs/reference/anatSummaries.html

docs/reference/anatSummarize.html

docs/reference/as.data.frame.anatMatrix.html

docs/reference/as.minc.html

docs/reference/check_step_sizes.html

docs/reference/civet.CreateBrainViewFile.html

docs/reference/civet.CreateBrainViewROI.html

docs/reference/civet.checkVersion.html

docs/reference/civet.computeNativeToStxRescalingFactor.html

docs/reference/civet.computeTissueVolumes.html

docs/reference/civet.flattenForDplyr.html

docs/reference/civet.getAllFilenames.html

docs/reference/civet.getFilename.html

docs/reference/civet.organizeCivetDatFilesAtlas.html

docs/reference/civet.readAllCivetFiles.html

docs/reference/civet.readCBRAIN.html

docs/reference/civet.readCivetDatFiles.html

docs/reference/civet.readQC.html

docs/reference/civet.vertexFilenames.html

docs/reference/civet.vertexTable.html

docs/reference/closestVertex.html

docs/reference/colour_mesh.html

docs/reference/compare_models.html

docs/reference/components_to_map.html

docs/reference/connected_components.html

docs/reference/create_mesh.html

docs/reference/getRMINCTestData.html

docs/reference/hanatAnova.html

docs/reference/hanatFDR.html

docs/reference/hanatLm.html

docs/reference/hanatLmer.html

docs/reference/hanatLmerEstimateDF.html

docs/reference/hanatPlot.html

docs/reference/hanatToVisGraph.html

docs/reference/hanatToVolume.html

docs/reference/index.html

docs/reference/is.minc.html

docs/reference/launch_shinyRMINC.html

docs/reference/likeVolume.html

docs/reference/line_obj_to_voxel.html

docs/reference/lut_to_palette.html

docs/reference/makeMICeDefsHierachical.html

docs/reference/map_to_colours.html

docs/reference/maskFile.html

docs/reference/mcMincApply.html

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docs/reference/minc.ray.trace.html

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docs/reference/mincArray.html

docs/reference/mincAttributes.html

docs/reference/mincContour.html

docs/reference/mincConvertTagToMincArrayCoordinates.html

docs/reference/mincConvertVoxelMatrix.html

docs/reference/mincConvertVoxelToWorld.html

docs/reference/mincConvertWorldMatrix.html

docs/reference/mincConvertWorldToVoxel.html

docs/reference/mincFDR.html

docs/reference/mincFDRMask.html

docs/reference/mincFDRThresholdVector.html

docs/reference/mincFileCheck.html

docs/reference/mincFindPeaks.html

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docs/reference/mincGetVector.html

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docs/reference/mincGetVoxel.html

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docs/reference/mincImage.html

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docs/reference/mincLmerEstimateDF.html

docs/reference/mincLogLikRatio.html

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docs/reference/mincPairedTtest.html

docs/reference/mincPlotAnatAndStatsSlice.html

docs/reference/mincPlotPeak.html

docs/reference/mincPlotSliceSeries.html

docs/reference/mincRandomize.html

docs/reference/mincRayTraceStats.html

docs/reference/mincSelectRandomVoxels.html

docs/reference/mincSummary.html

docs/reference/mincTFCE.html

docs/reference/mincTriplanarSlicePlot.html

docs/reference/mincTtest.html

docs/reference/mincVectorToVoxelCoordinates.html

docs/reference/mincWilcoxon.html

docs/reference/mincWriteVolume.html

docs/reference/minc_history.html

docs/reference/obj_montage.html

docs/reference/obj_to_graph.html

docs/reference/pMincApply.html

docs/reference/plot.bic_lines.html

docs/reference/plot.bic_obj.html

docs/reference/plot.obj_mesh.html

docs/reference/pt2.html

docs/reference/qMincApply.html

docs/reference/read_line_obj.html

docs/reference/read_obj.html

docs/reference/runRMINCTestbed.html

docs/reference/setRMINCMaskedValue.html

docs/reference/simplify2minc.html

docs/reference/simplify_masked.html

docs/reference/thresholds.html

docs/reference/verboseRun.html

docs/reference/vertexAnova.html

docs/reference/vertexApply.html

docs/reference/vertexFDR.html

docs/reference/vertexFindPeaks.html

docs/reference/vertexLm.html

docs/reference/vertexLmer.html

docs/reference/vertexLmerEstimateDF.html

docs/reference/vertexLookup.html

docs/reference/vertexSelect.html

docs/reference/vertexSummaries.html

docs/reference/vertexTFCE.html

docs/reference/vertexTable.html

docs/reference/volume.combineMaskVolumes.html

docs/reference/volume.explodeLabelVolume.html

docs/reference/voxel_atlas_defs.html

docs/reference/writeVertex.html

etc/file_io_experiments.R etc/hanat-testing.Rmd

etc/hanat-testing.nb.html

etc/mincLm_benchmarking.Rmd

etc/mincLm_benchmarking.html

etc/mincTFCE_experiments.R etc/more_vtfce_tests.R etc/shiny_testing.R etc/test_torque_parallel.R etc/vertexTFCE_experiments.R etc/vertexTests.R index.Rmd

inst/CITATION

inst/civet_extras/CIVET_2.0_AAL_labels.txt

inst/civet_extras/CIVET_2.0_DKT_labels.txt

inst/civet_extras/CIVET_2.1_AAL_labels.txt

inst/civet_extras/CIVET_2.1_AAL_left.txt

inst/civet_extras/CIVET_2.1_AAL_right.txt

inst/documentation/RMINC-userGuide.Rnw

inst/documentation/RMINC-userGuide.pdf inst/documentation/RMINC_Parallelism.Rmd

inst/documentation/RMINC_Parallelism.html

inst/documentation/RMINC_rgl.Rmd

inst/documentation/RMINC_rgl.html

inst/documentation/RMINC_rgl_data/selected_vertices.png

inst/documentation/VBMstats.Rnw

inst/documentation/VBMstats.pdf inst/documentation/hierarchiesTutorial.Rmd

inst/documentation/hierarchiesTutorial.html

inst/documentation/visualizationTutorial.Rmd

inst/documentation/visualizationTutorial.html

inst/luts/blue

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inst/luts/labels.map

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inst/luts/red

inst/luts/spectral

inst/luts/yellow

inst/parallel/MICe_BatchJobs.R inst/parallel/pbs_batchtools.R

inst/parallel/pbs_script.tmpl

inst/parallel/sge_batchtools.R

inst/parallel/sge_script.tmpl

inst/parallel/slurm_batchtools.R

inst/parallel/slurm_script.tmpl

inst/shinyRMINC/server.R inst/shinyRMINC/ui.R

inst/tools/ax_lib_hdf5.m4

inst/tools/ch_minc_depends.m4

src/Makevars.in

src/RMINC_init.c

src/RcppExports.cpp

src/anat_summaries.cpp

src/minc2_io.h

src/minc2_read.c

src/minc2_support.c

src/minc2_write.c

src/minc_anova.c

src/minc_apply.cpp

src/minc_cpp.cpp

src/minc_cpp.h

src/minc_reader.c

src/minc_reader.h

src/modelling_functions.c

src/modelling_functions.h

src/slice_loop.h

src/slice_loop_functions.c

src/utilities.cpp

src/vertex_modelling.c

src/vertex_tfce.cpp

src/weighted_least_squares.c

Mouse-Imaging-Centre/RMINC documentation built on Nov. 12, 2022, 1:50 p.m.

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Statistical Tools for Medical Imaging NetCDF (MINC) Files

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Statistical Tools for Medical Imaging NetCDF (MINC) Files

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Mouse-Imaging-Centre/RMINC
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Statistical Tools for Medical Imaging NetCDF (MINC) Files