mincLabelPeaks: label peaks with the name of the atlas structure they are in

In Mouse-Imaging-Centre/RMINC: Statistical Tools for Medical Imaging NetCDF (MINC) Files

label peaks with the name of the atlas structure they are in

Description

label peaks with the name of the atlas structure they are in

Usage

mincLabelPeaks(peaks, atlas, defs = getOption("RMINC_LABEL_DEFINITIONS"))

Arguments

peaks	the output of mincFindPeaks
atlas	the atlas volume, either as a mincArray or as a filename
defs	the atlas definitions, same as used for anatGetAll

Value

the peaks data frame, with an extra column containing the label

Examples

## Not run: 
peaks <- mincFindPeaks(-log10(qvs), "Neonatal:time.to.sac", 
                       "pos", posThreshold=1.3, minDistance=1)
peaks <- mincLabelPeaks(peaks, 
                         atlasVol, 
                         defs="Dorr_2008_Steadman_2013_Ullmann_2013_mapping_of_labels.csv")

## End(Not run)

Mouse-Imaging-Centre/RMINC documentation built on Feb. 24, 2025, 1:22 a.m.