API for Mouse-Imaging-Centre/RMINC
Statistical Tools for Medical Imaging NetCDF (MINC) Files

Global functions
AIC.anatModel Source code
AIC.mincLm Source code
AIC.vertexLm Source code
AICc Man page Source code
AICc.anatModel Source code
AICc.mincLm Source code
AICc.vertexLm Source code
BIC.anatModel Source code
BIC.mincLm Source code
BIC.vertexLm Source code
RMINC Man page
RMINC-package Man page
RMINC_MASKED_VALUE Man page
addHierarchyToDefs Source code
addVolumesToHierarchy Man page Source code
add_colour_bar Man page Source code
add_opacity Man page Source code
anatAnova Man page Source code
anatApply Man page Source code
anatCombineStructures Man page Source code
anatCreateVolume Man page Source code
anatFDR Man page Source code
anatFDR.anatLmer Man page Source code
anatFDR.anatModel Man page Source code
anatGetAll Man page Source code
anatGetAll_old Man page Source code
anatGetFile Source code
anatLm Man page Source code
anatLmer Man page Source code
anatLmerEstimateDF Man page Source code
anatMean Man page Source code
anatRenameRows Source code
anatSd Man page Source code
anatSum Man page Source code
anatSummaries Man page
anatSummarize Man page Source code
anatVar Man page Source code
anat_summary Source code
anatomy_summary Source code
anova_summary Source code
as.data.frame.anatMatrix Man page Source code
as.minc Man page Source code
asMinc2 Source code
atlas_get_all Source code
checkCurrentUlimit Source code
check_model_list Source code
check_stat_type Source code
check_step_sizes Man page Source code
civet.AllROIs Source code
civet.CreateBrainViewFile Man page Source code
civet.CreateBrainViewROI Man page Source code
civet.checkVersion Man page Source code
civet.computeNativeTissueVolumes Man page Source code
civet.computeNativeToStxRescalingFactor Man page Source code
civet.computeStxTissueVolumes Man page Source code
civet.computeTissueVolumes Man page
civet.flattenForDplyr Man page Source code
civet.getAllFilenames Man page Source code
civet.getFilename Man page
civet.getFilenameCerebrumMask Man page Source code
civet.getFilenameClassify Man page Source code
civet.getFilenameCsfPve Man page Source code
civet.getFilenameGrayMatterPve Man page Source code
civet.getFilenameGrayMatterSurfaces Man page Source code
civet.getFilenameLinearTransform Man page Source code
civet.getFilenameMeanSurfaceCurvature Man page Source code
civet.getFilenameMidSurfaces Man page Source code
civet.getFilenameNonlinearTransform Man page Source code
civet.getFilenameSkullMask Man page Source code
civet.getFilenameStxT1 Man page Source code
civet.getFilenameWhiteMatterPve Man page Source code
civet.getFilenameWhiteMatterSurfaces Man page Source code
civet.getFilenamesCorticalArea Man page Source code
civet.getFilenamesCorticalThickness Man page Source code
civet.getFilenamesCorticalVolume Man page Source code
civet.organizeCivetDatFilesAtlas Man page Source code
civet.organizeCivetDatFilesMidWhiteGrey Source code
civet.organizeCivetDatFilesWholeBrain Source code
civet.organizeCivetTxtFilesVertex Source code
civet.readAllCivetFiles Man page Source code
civet.readCBRAIN Man page Source code
civet.readCivetDatFiles Man page Source code
civet.readQC Man page Source code
civet.vertexFilenames Man page Source code
civet.vertexTable Man page Source code
civet_filenames_1_1_12 Source code
civet_filenames_1_1_9 Source code
civet_filenames_2_0_0 Source code
civet_qc_1_1_12 Source code
civet_qc_2_0_0 Source code
civet_qc_2_1_0 Source code
closestVertex Man page Source code
colourVector Source code
colour_mesh Man page Source code
compare_models Man page Source code
compare_models.anatModel Source code
compare_models.mincLm Source code
compare_models.vertexLm Source code
components_to_map Man page Source code
connected_components Man page Source code
coords2ind Source code
copyABIinfo Source code
copyExtraAttributes Source code
count_labels Source code
create_anat_results Source code
create_labels_frame Source code
create_mesh Man page Source code
create_parallel_mask Source code
effect_summary Source code
enoughAvailableFileDescriptors Source code
f Source code
failing_mclapply Source code
failing_mcmapply Source code
fast.qvalue Source code
fixBranching Source code
fix_names Source code
fixef_summary Source code
getCall.mincLm Source code
getCall.vertexLm Source code
getRMINCTestData Man page Source code
getRangeFromHistogram Source code
getSlice Source code
get_volume Source code
graph_tfce Source code
graph_tfce_wqu Source code
groupingVector Source code
hanatAnova Man page Source code
hanatFDR Man page Source code
hanatLm Man page Source code
hanatLmer Man page Source code
hanatLmerEstimateDF Man page Source code
hanatPlot Man page Source code
hanatToVisGraph Man page Source code
hanatToVolume Man page Source code
hanatView Man page Source code
ind2coords Source code
is.minc Man page Source code
isMinc Source code
isMinc1 Source code
isMinc2 Source code
label_counts Source code
lateralizeDefs Source code
launch_shinyRMINC Man page Source code
likeVolume Man page Source code
likeVolume<- Man page
line_obj_to_voxel Man page Source code
lut_to_palette Man page Source code
makeMICeDefsHierachical Man page Source code
map_to_colours Man page Source code
maskFile Man page Source code
maskFile<- Man page
matrixApply Source code
mcMincApply Man page Source code
mesh_area Source code
minc.append.history Man page Source code
minc.dimensions.sizes Man page Source code
minc.get.history Man page Source code
minc.get.hyperslab Man page Source code
minc.get.volumes Source code
minc.isReadable Source code
minc.ray.trace Man page Source code
minc.separation.sizes Man page Source code
mincAnova Man page Source code
mincApply Man page Source code
mincApplyRCPP Man page Source code
mincArray Man page Source code
mincAttributes Man page Source code
mincContour Man page Source code
mincConvertTagToMincArrayCoordinates Man page Source code
mincConvertVoxelMatrix Man page Source code
mincConvertVoxelToWorld Man page Source code
mincConvertWorldMatrix Man page Source code
mincConvertWorldToVoxel Man page Source code
mincCorrelation Man page Source code
mincFDR Man page Source code
mincFDR.mincLmer Man page Source code
mincFDR.mincLogLikRatio Man page Source code
mincFDR.mincMultiDim Man page Source code
mincFDR.mincSingleDim Man page Source code
mincFDRMask Man page Source code
mincFDRThresholdVector Man page Source code
mincFileCheck Man page Source code
mincFindPeaks Man page Source code
mincGetDataClasses Source code
mincGetDataTypes Source code
mincGetMask Man page Source code
mincGetTagFile Man page Source code
mincGetVector Man page Source code
mincGetVolume Man page Source code
mincGetVoxel Man page Source code
mincGetWorldVoxel Man page Source code
mincImage Man page Source code
mincLabelPeaks Man page Source code
mincLm Man page Source code
mincLm_c_wrapper Source code
mincLmer Man page Source code
mincLmerEstimateDF Man page Source code
mincLmerOptimize Source code
mincLmerOptimizeAndExtract Source code
mincLmerOptimizeCore Source code
mincLogLikRatio Man page Source code
mincLogLikRatioParametricBootstrap Man page Source code
mincMean Man page Source code
mincPairedTtest Man page Source code
mincPlotAnatAndStatsSlice Man page Source code
mincPlotPeak Man page Source code
mincPlotSimpleSliceSeries Source code
mincPlotSliceSeries Man page Source code
mincPlotStatsSliceSeries Source code
mincRandomize Man page Source code
mincRandomize.mincLm Man page Source code
mincRandomize_core Source code
mincRayTraceStats Man page Source code
mincSd Man page Source code
mincSelectRandomVoxels Man page Source code
mincSum Man page Source code
mincSummary Man page Source code
mincTFCE Man page Source code
mincTFCE.matrix Man page Source code
mincTFCE.mincLm Man page Source code
mincTFCE.mincMultiDim Man page Source code
mincTFCE.mincSingleDim Man page Source code
mincTriplanarSlicePlot Man page Source code
mincTtest Man page Source code
mincVar Man page Source code
mincVectorToVoxelCoordinates Man page Source code
mincWilcoxon Man page Source code
mincWriteVolume Man page Source code
mincWriteVolume.default Man page Source code
mincWriteVolume.mincMultiDim Man page Source code
mincWriteVolume.mincSingleDim Man page Source code
minc_history Man page
modelToTree Source code
neighbour_list Source code
new_file Source code
obj_montage Man page Source code
obj_to_graph Man page Source code
onLoad Source code
pMincApply Man page Source code
parseLmFormula Source code
plot.bic_lines Man page Source code
plot.bic_obj Man page Source code
plot.obj_mesh Man page Source code
plotLocator Source code
print.RMINC_MASKED_VALUE Source code
print.anatMatrix Source code
print.anatModel Source code
print.mincLm_randomization Source code
print.mincLmer Source code
print.mincLogLikRatio Source code
print.mincMultiDim Source code
print.mincQvals Source code
print.mincSingleDim Source code
print.mincTFCE_randomization Source code
print.mincVoxel Source code
print.model_comparison Source code
print.vertexMultiDim Source code
pt2 Man page Source code
qMincApply Man page Source code
qMincMap Man page Source code
qMincReduce Man page Source code
qMincRegistry Man page Source code
ranef_summary Source code
rate_cutoffs Source code
rate_one_sided Source code
rate_symmetric Source code
rbind.anatModel Source code
rcpp_minc_apply Source code
read_line_obj Man page Source code
read_obj Man page Source code
replaceValues Source code
rminc.checkForExternalProgram Source code
rminc.readLinearXfmFile Source code
runRMINCTestbed Man page Source code
scaleSlice Source code
scaleSliceToPalette Source code
select_one_vertex Source code
setMincAttributes Man page Source code
setNA Source code
setNaN Source code
setRMINCMaskedValue Man page Source code
simplify2minc Man page Source code
simplify_masked Man page Source code
single_closest_vertex Source code
sliceSeriesLayout Source code
summary.mincQvals Source code
summary.model_comparison Source code
tableOpenFiles Source code
tenacious_remove_registry Source code
thresholds Man page Source code
thresholds.mincQvals Man page Source code
thresholds.minc_randomization Man page Source code
vals_to_numeric Source code
verboseRun Man page Source code
vertexAnova Man page Source code
vertexApply Man page Source code
vertexFDR Man page Source code
vertexFDR.vertexLmer Man page Source code
vertexFDR.vertexMultiDim Man page Source code
vertexFindPeaks Man page Source code
vertexLm Man page Source code
vertexLmer Man page Source code
vertexLmerEstimateDF Man page Source code
vertexLookup Man page Source code
vertexMean Man page Source code
vertexRandomize.vertexLm Source code
vertexSd Man page Source code
vertexSelect Man page Source code
vertexSum Man page Source code
vertexSummaries Man page
vertexTFCE Man page Source code
vertexTFCE.character Man page Source code
vertexTFCE.matrix Man page Source code
vertexTFCE.numeric Man page Source code
vertexTFCE.vertexLm Man page Source code
vertexTable Man page Source code
vertexVar Man page Source code
volume.combineMaskVolumes Man page Source code
volume.explodeLabelVolume Man page Source code
voxel_anova_wrapper Source code
voxel_atlas_defs Man page
writeVertex Man page Source code
Mouse-Imaging-Centre/RMINC documentation built on July 16, 2018, 7:03 a.m.