API for Mouse-Imaging-Centre/RMINC
Statistical Tools for Medical Imaging NetCDF (MINC) Files

Global functions
.onLoad Source code
AIC.anatModel Source code
AIC.mincLm Source code
AIC.vertexLm Source code
AICc Man page Source code
AICc.anatModel Source code
AICc.mincLm Source code
AICc.vertexLm Source code
BIC.anatModel Source code
BIC.mincLm Source code
BIC.vertexLm Source code
RMINC Man page
RMINC-package Man page
RMINC_MASKED_VALUE Man page
`likeVolume<-` Source code
`maskFile<-` Source code
addHierarchyToDefs Source code
addVolumesToHierarchy Man page Source code
add_colour_bar Man page
add_opacity Man page Source code
anatAnova Man page
anatApply Man page
anatCombineStructures Man page
anatCreateVolume Man page
anatEffectSize Man page Source code
anatFDR Man page Source code
anatFDR.anatLmer Man page Source code
anatFDR.anatModel Man page Source code
anatGetAll Man page Source code
anatGetAll_old Man page
anatGetFile Source code
anatLm Man page
anatLmer Man page
anatLmerEstimateDF Man page
anatMean Man page
anatRenameRows Source code
anatSd Man page
anatSum Man page
anatSummaries Man page
anatSummarize Man page
anatVar Man page
anat_summary Source code
as.data.frame.anatMatrix Man page
as.minc Man page Source code
atlas_get_all Source code
check_model_list Source code
check_step_sizes Man page Source code
civet.CreateBrainViewFile Man page
civet.CreateBrainViewROI Man page
civet.checkVersion Man page Source code
civet.computeNativeTissueVolumes Man page
civet.computeNativeToStxRescalingFactor Man page
civet.computeStxTissueVolumes Man page
civet.computeTissueVolumes Man page
civet.flattenForDplyr Man page
civet.getAllFilenames Man page Source code
civet.getFilename Man page
civet.getFilenameCerebrumMask Man page Source code
civet.getFilenameClassify Man page Source code
civet.getFilenameCsfPve Man page Source code
civet.getFilenameGrayMatterPve Man page Source code
civet.getFilenameGrayMatterSurfaces Man page Source code
civet.getFilenameLinearTransform Man page Source code
civet.getFilenameMeanSurfaceCurvature Man page Source code
civet.getFilenameMidSurfaces Man page Source code
civet.getFilenameNonlinearTransform Man page Source code
civet.getFilenameSkullMask Man page Source code
civet.getFilenameStxT1 Man page Source code
civet.getFilenameWhiteMatterPve Man page Source code
civet.getFilenameWhiteMatterSurfaces Man page Source code
civet.getFilenamesCorticalArea Man page Source code
civet.getFilenamesCorticalThickness Man page Source code
civet.getFilenamesCorticalVolume Man page Source code
civet.organizeCivetDatFilesAtlas Man page
civet.readAllCivetFiles Man page
civet.readCBRAIN Man page Source code
civet.readCivetDatFiles Man page
civet.readQC Man page
civet.vertexFilenames Man page Source code
civet.vertexTable Man page Source code
civet_filenames_1_1_12 Source code
civet_filenames_1_1_9 Source code
civet_filenames_2_0_0 Source code
closestVertex Man page
colourVector Source code
colour_mesh Man page Source code
compare_models Man page Source code
compare_models.anatModel Source code
compare_models.mincLm Source code
compare_models.vertexLm Source code
components_to_map Man page Source code
connected_components Man page Source code
coords2ind Source code
copyABIinfo Source code
copyExtraAttributes Source code
count_labels Source code
create_mesh Man page Source code
create_parallel_mask Source code
extract_column Man page
failing_mclapply Source code
failing_mcmapply Source code
fixBranching Source code
fix_names Source code
getCall.mincLm Source code
getRMINCTestData Man page
getSlice Source code
get_volume Source code
graph_tfce Source code
graph_tfce_wqu Source code
groupingVector Source code
hanatAnova Man page Source code
hanatFDR Man page Source code
hanatLm Man page Source code
hanatLmer Man page Source code
hanatLmerEstimateDF Man page Source code
hanatPlot Man page Source code
hanatToVisGraph Man page Source code
hanatToVolume Man page Source code
hanatView Man page Source code
ind2coords Source code
is.minc Man page Source code
lateralizeDefs Source code
launch_shinyRMINC Man page Source code
likeVolume Man page Source code
likeVolume<- Man page
line_obj_to_voxel Man page
lut_to_palette Man page Source code
makeMICeDefsHierachical Man page Source code
map_to_colours Man page Source code
maskFile Man page Source code
maskFile<- Man page
matrixApply Source code
mcMincApply Man page Source code
mesh_area Source code
minc.append.history Man page
minc.dimensions.sizes Man page
minc.get.history Man page
minc.get.hyperslab Man page
minc.ray.trace Man page Source code
minc.separation.sizes Man page
mincAnova Man page Source code
mincApply Man page Source code
mincApplyRCPP Man page Source code
mincArray Man page Source code
mincAttributes Man page Source code
mincContour Man page Source code
mincConvertTagToMincArrayCoordinates Man page Source code
mincConvertVoxelMatrix Man page Source code
mincConvertVoxelToWorld Man page Source code
mincConvertWorldMatrix Man page Source code
mincConvertWorldToVoxel Man page Source code
mincCorrelation Man page Source code
mincEffectSize Man page Source code
mincFDR Man page Source code
mincFDR.mincLmer Man page Source code
mincFDR.mincLogLikRatio Man page Source code
mincFDR.mincMultiDim Man page Source code
mincFDR.mincSingleDim Man page Source code
mincFDRMask Man page Source code
mincFDRThresholdVector Man page Source code
mincFileCheck Man page Source code
mincFindPeaks Man page Source code
mincGetMask Man page
mincGetTagFile Man page Source code
mincGetVector Man page Source code
mincGetVolume Man page Source code
mincGetVoxel Man page Source code
mincGetWorldVoxel Man page Source code
mincImage Man page Source code
mincLabelPeaks Man page Source code
mincLm Man page Source code
mincLm_c_wrapper Source code
mincLmer Man page Source code
mincLmerEstimateDF Man page Source code
mincLogLikRatio Man page
mincLogLikRatioParametricBootstrap Man page
mincMean Man page Source code
mincPairedTtest Man page Source code
mincPlotAnatAndStatsSlice Man page Source code
mincPlotPeak Man page Source code
mincPlotSimpleSliceSeries Source code
mincPlotSliceSeries Man page Source code
mincPlotStatsSliceSeries Source code
mincRandomize Man page Source code
mincRandomize.mincLm Man page Source code
mincRandomize_core Source code
mincRayTraceStats Man page Source code
mincSd Man page Source code
mincSelectRandomVoxels Man page
mincSum Man page Source code
mincSummary Man page Source code
mincTFCE Man page Source code
mincTFCE.matrix Man page Source code
mincTFCE.mincLm Man page Source code
mincTFCE.mincMultiDim Man page Source code
mincTFCE.mincSingleDim Man page Source code
mincTriplanarSlicePlot Man page Source code
mincTtest Man page Source code
mincVar Man page Source code
mincVectorToVoxelCoordinates Man page
mincWilcoxon Man page Source code
mincWriteVolume Man page
mincWriteVolume.default Man page
mincWriteVolume.mincMultiDim Man page
mincWriteVolume.mincSingleDim Man page
minc_history Man page
modelToTree Source code
neighbour_list Source code
new_file Source code
obj_montage Man page
obj_to_graph Man page Source code
pMincApply Man page Source code
plot.bic_lines Man page
plot.bic_obj Man page
plot.obj_mesh Man page
plotLocator Source code
print.RMINC_MASKED_VALUE Source code
print.mincLm_randomization Source code
print.mincLmer Source code
print.mincLogLikRatio Source code
print.mincMultiDim Source code
print.mincQvals Source code
print.mincSingleDim Source code
print.mincTFCE_randomization Source code
print.mincVoxel Source code
print.model_comparison Source code
print.vertexMultiDim Source code
pt2 Man page
qMincApply Man page Source code
qMincMap Man page Source code
qMincReduce Man page Source code
qMincRegistry Man page Source code
rcpp_minc_apply Source code
read_line_obj Man page
read_obj Man page Source code
replaceColours Source code
replaceValues Source code
runRMINCTestbed Man page
scaleSlice Source code
scaleSliceToPalette Source code
setMincAttributes Man page Source code
setRMINCMaskedValue Man page Source code
simplify2minc Man page Source code
simplify_masked Man page Source code
sliceSeriesLayout Source code
summary.mincQvals Source code
summary.model_comparison Source code
tenacious_remove_registry Source code
thresholds Man page Source code
thresholds.mincQvals Man page Source code
thresholds.minc_randomization Man page Source code
vals_to_numeric Source code
verboseRun Man page
vertexAnova Man page Source code
vertexApply Man page Source code
vertexAtlasApply Man page Source code
vertexEffectSize Man page Source code
vertexFDR Man page Source code
vertexFDR.vertexLmer Man page Source code
vertexFDR.vertexMultiDim Man page Source code
vertexFindPeaks Man page Source code
vertexLm Man page Source code
vertexLmer Man page Source code
vertexLmerEstimateDF Man page Source code
vertexLookup Man page
vertexMean Man page Source code
vertexSd Man page Source code
vertexSelect Man page
vertexSum Man page Source code
vertexSummaries Man page
vertexTFCE Man page
vertexTFCE.character Man page
vertexTFCE.matrix Man page
vertexTFCE.numeric Man page
vertexTFCE.vertexLm Man page
vertexTable Man page
vertexVar Man page Source code
volume.combineMaskVolumes Man page
volume.explodeLabelVolume Man page
voxel_anova_wrapper Source code
voxel_atlas_defs Man page
writeVertex Man page
Mouse-Imaging-Centre/RMINC documentation built on May 7, 2019, 5:01 p.m.