hanatToVisGraph: Turns an anatomical tree into a nodes and edges for...

In Mouse-Imaging-Centre/RMINC: Statistical Tools for Medical Imaging NetCDF (MINC) Files

Turns an anatomical tree into a nodes and edges for visNetwork plotting

Description

Turns an anatomical tree into a nodes and edges for visNetwork plotting

Usage

hanatToVisGraph(
  hanatTree,
  colourVariable = "color_hex_triplet",
  colourScale = colorRampPalette(c("red", "yellow"))(255),
  rColourScale = colorRampPalette(c("blue", "turquoise1"))(255),
  low = NULL,
  high = NULL,
  symmetric = F,
  transparent = "#FDFDFD",
  edgeColourFromABI = F
)

hanatView(..., fontsize = 14, levelSeparation = 500)

Arguments

hanatTree	The input anatomical tree
colourVariable	String containing the variable to colour nodes with
colourScale	Colour scale to use
rColourScale	Reverse colour scale to use if symmetric colours enabled
low	Lower cut-off for colour scale
high	Upper cut-off for colour scale
symmetric	Boolean for whether colour scale is symmetric
transparent	Colour to use for transparent nodes
edgeColourFromABI	Whether to set edge colours based on ABI atlas
...	Extra arguments to hanatToVisGraph from hanatView
fontsize	The font size for hanatView
levelSeparation	Spacing between hierarchical layers for hanatView

Value

list with nodes and edges data frames

Functions

• hanatView: Directly view the graph

Mouse-Imaging-Centre/RMINC documentation built on Feb. 24, 2025, 1:22 a.m.