View source: R/minc_hierarchical_anatomy.R
hanatToVisGraph | R Documentation |
Turns an anatomical tree into a nodes and edges for visNetwork plotting
hanatToVisGraph( hanatTree, colourVariable = "color_hex_triplet", colourScale = colorRampPalette(c("red", "yellow"))(255), rColourScale = colorRampPalette(c("blue", "turquoise1"))(255), low = NULL, high = NULL, symmetric = F, transparent = "#FDFDFD", edgeColourFromABI = F ) hanatView(..., fontsize = 14, levelSeparation = 500)
hanatTree |
The input anatomical tree |
colourVariable |
String containing the variable to colour nodes with |
colourScale |
Colour scale to use |
rColourScale |
Reverse colour scale to use if symmetric colours enabled |
low |
Lower cut-off for colour scale |
high |
Upper cut-off for colour scale |
symmetric |
Boolean for whether colour scale is symmetric |
transparent |
Colour to use for transparent nodes |
edgeColourFromABI |
Whether to set edge colours based on ABI atlas |
... |
Extra arguments to |
fontsize |
The font size for |
levelSeparation |
Spacing between hierarchical layers for |
list with nodes and edges data frames
hanatView
: Directly view the graph
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