mincPlotAnatAndStatsSlice: Anatomy and Statistics Slice

In Mouse-Imaging-Centre/RMINC: Statistical Tools for Medical Imaging NetCDF (MINC) Files

Anatomy and Statistics Slice

Description

Plot a given slice through a MINC volume and superimpose statistics on the slice.

Usage

mincPlotAnatAndStatsSlice(
  anatomy,
  statistics,
  slice = NULL,
  dimension = 2,
  low = min(statistics, na.rm = TRUE),
  high = max(statistics, na.rm = TRUE),
  anatLow = min(anatomy, na.rm = TRUE),
  anatHigh = max(anatomy, na.rm = TRUE),
  symmetric = FALSE,
  col = NULL,
  rcol = NULL,
  legend = NULL,
  acol = gray.colors(255, start = 0),
  legendTextColour = "black"
)

Arguments

anatomy	A minc array of the anatomy volume to plot
statistics	optional statistics or label file to overlay on anatomy slices
slice	the voxel index of the slice of interest
dimension	integer denoting which dimension to slice across
low	the minimum statistic to plot
high	the maximum statistic to plot
anatLow	the minimum anatomy intensity to plot
anatHigh	the maximum antomy intensity to plot
symmetric	whether the statistics are symmetric (such as for t-statistics)
col	colours for statistics
rcol	colours for negative statistics if using a symmetric statistic
legend	an optional string to name the legend, indicating desire for a legend
acol	colours to use for the anatomy
legendTextColour	an optional description of the text colour for the legend (or not)

Value

invisible NULL

Mouse-Imaging-Centre/RMINC documentation built on Feb. 24, 2025, 1:22 a.m.