mincPlotAnatAndStatsSlice | R Documentation |
Plot a given slice through a MINC volume and superimpose statistics on the slice.
mincPlotAnatAndStatsSlice( anatomy, statistics, slice = NULL, dimension = 2, low = min(statistics, na.rm = TRUE), high = max(statistics, na.rm = TRUE), anatLow = min(anatomy, na.rm = TRUE), anatHigh = max(anatomy, na.rm = TRUE), symmetric = FALSE, col = NULL, rcol = NULL, legend = NULL, acol = gray.colors(255, start = 0), legendTextColour = "black" )
anatomy |
A minc array of the anatomy volume to plot |
statistics |
optional statistics or label file to overlay on anatomy slices |
slice |
the voxel index of the slice of interest |
dimension |
integer denoting which dimension to slice across |
low |
the minimum statistic to plot |
high |
the maximum statistic to plot |
anatLow |
the minimum anatomy intensity to plot |
anatHigh |
the maximum antomy intensity to plot |
symmetric |
whether the statistics are symmetric (such as for t-statistics) |
col |
colours for statistics |
rcol |
colours for negative statistics if using a symmetric statistic |
legend |
an optional string to name the legend, indicating desire for a legend |
acol |
colours to use for the anatomy |
legendTextColour |
an optional description of the text colour for the legend (or not) |
invisible NULL
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