mincFDRThresholdVector: a utility function to compute thresholds

In Mouse-Imaging-Centre/RMINC: Statistical Tools for Medical Imaging NetCDF (MINC) Files

a utility function to compute thresholds

Description

a utility function to compute thresholds

Usage

mincFDRThresholdVector(
  pvals,
  qvals,
  thresholdFunc = NULL,
  p.thresholds = c(0.01, 0.05, 0.1, 0.15, 0.2)
)

Arguments

pvals	a vector of pvalues
qvals	a vector of corrected qvalues (such as returend by p.adjust)
thresholdFunc	a function that returns the threshold given a vector of pvalues
p.thresholds	the pvalues at which to compute the threshold The function should be the quantile function for the distribution being tested. For example, for the chi squared distribution the function would be: tfunc <- function(x) qchisq(max(x), df[[i]], lower.tail=FALSE)

Mouse-Imaging-Centre/RMINC documentation built on Feb. 24, 2025, 1:22 a.m.