API for NBISweden/genecovr
Gene body coverage analysis to evaluate genome assemblies

Global functions
.create_seqinfo	Source code
.valid.AlignmentPairs	Source code
AlignmentPairs	Man page
AlignmentPairs,GRanges,GRanges-method	Man page
AlignmentPairs-class	Man page
AlignmentPairsList	Man page
AlignmentPairsList,list-method	Man page
AlignmentPairsList-class	Man page
as.data.frame,AlignmentPairsList-method	Man page
autoplot.AlignmentPairsList	Man page Source code
breadthOfCoverage	Man page Source code
countSubjectsByCoverage	Man page Source code
deletions	Man page
depthOfCoverage	Source code
divergence	Man page
geneBodyCoverage	Man page
geneBodyCoverage,AlignmentPairs-method	Man page
geneBodyCoverage,AlignmentPairsList-method	Man page
genecovr	Man page
genecovr-package	Man page
insertionSummary	Source code
insertions	Man page
insertions,GRanges,ANY	Man page
insertions,GRanges-method	Man page
matches	Man page
matches,AlignmentPairs-method	Man page
mismatches	Man page
mismatches,AlignmentPairs-method	Man page
plot.AlignmentPairsList	Man page Source code
psl methods	Man page
query	Man page
query,AlignmentPairs-method	Man page
query<-	Man page
query<-,AlignmentPairs,GRanges-method	Man page
readFastaIndex	Man page Source code
readPsl	Man page Source code
reduceHitCoverage	Man page Source code
repmatches	Man page
repmatches,AlignmentPairs-method	Man page
sbjct	Man page
sbjct,AlignmentPairs-method	Man page
sbjct<-	Man page
sbjct<-,AlignmentPairs,GRanges-method	Man page
score	Man page
sequence data methods	Man page
summarizeGeneBodyCoverage	Man page Source code

NBISweden/genecovr documentation built on Jan. 26, 2024, 7:15 a.m.

Note that we can't provide technical support on individual packages. You should contact the package authors for that.