countSubjectsByCoverage: countSubjectsByCoverage
In NBISweden/genecovr: Gene body coverage analysis to evaluate genome assemblies
View source: R/methods-AlignmentPairs-class.R
countSubjectsByCoverage R Documentation
countSubjectsByCoverage
Description
countSubjectsByCoverage
Usage
countSubjectsByCoverage(
x,
min.coverage = seq(0.25, 1, 0.25),
min.match = 0.9,
nmax = 5
)
Arguments
x
AlignmentPairs or DataFrame object
min.coverage
coverage cutoffs to apply to transcripts
min.match
filter out hits with fraction matching bases less
than min.match
nmax
maximum number of subjects to count
NBISweden/genecovr documentation built on Jan. 26, 2024, 7:15 a.m.
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View source: R/methods-AlignmentPairs-class.R
| countSubjectsByCoverage | R Documentation |
countSubjectsByCoverage
Description
countSubjectsByCoverage
Usage
countSubjectsByCoverage(
x,
min.coverage = seq(0.25, 1, 0.25),
min.match = 0.9,
nmax = 5
)
Arguments
x |
AlignmentPairs or DataFrame object |
min.coverage |
coverage cutoffs to apply to transcripts |
min.match |
filter out hits with fraction matching bases less than min.match |
nmax |
maximum number of subjects to count |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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