AlignmentPairs-class: Representation of an alignment pair

In NBISweden/genecovr: Gene body coverage analysis to evaluate genome assemblies

Representation of an alignment pair

Description

Pairs subclass

Constructor for AlignmentPairs

Usage

AlignmentPairs(query, subject, ...)

## S4 method for signature 'GRanges,GRanges'
AlignmentPairs(query, subject, ...)

Arguments

query	vectorized object representing query
subject	vectorized object representing subject
...	Arguments to pass to constructor

Details

The AlignmentPairs class extends the Pairs-class

Value

AlignmentPairs object

Constructor

AlignmentPairs(query, subject, ...): Constructs an AlignmentPairs object by aligning the vectors query and subject.

See Also

Pairs-class

NBISweden/genecovr documentation built on Jan. 26, 2024, 7:15 a.m.