Man pages for NBISweden/genecovr
Gene body coverage analysis to evaluate genome assemblies
| AlignmentPairs-class | Representation of an alignment pair |
| AlignmentPairsList-class | List of AlignmentPairs instances |
| as.data.frame-AlignmentPairsList-method | as.data.frame |
| autoplot.AlignmentPairsList | autoplot.AlignmentPairsList |
| breadthOfCoverage | breadthOfCoverage |
| countSubjectsByCoverage | countSubjectsByCoverage |
| deletions-methods | Get deletions from an alignment. |
| divergence-methods | Get divergence from an alignment |
| geneBodyCoverage | Get gene body coverage |
| genecovr-package | genecovr: Gene body coverage analysis to evaluate genome... |
| insertions-methods | Get insertions from an alignment |
| matches-methods | matches |
| plot.AlignmentPairsList | plot |
| psl-methods | methods-psl |
| query-methods | Retrieve query from object |
| readFastaIndex | readFastaIndex |
| readPsl | readPsl |
| reduceHitCoverage | reduceHitCoverage |
| sbjct-methods | Retrieve subject from object |
| score-methods | Retrieve score from object |
| sequence-data-methods | methods-sequence-data |
| summarizeGeneBodyCoverage | summarizeGeneBodyCoverage |
