API for NCBI-Hackathons/Integrating-HLA-typing-methods-and-RNA-seq
HLA typing clustering and visualization based on specific similarity metrics
| Global functions | |
|---|---|
| HLAClustRView | Man page |
| HLAClustRView-package | Man page |
| calculateHamming | Man page Source code |
| demoHLADataset | Man page |
| draw_dendrogram | Man page Source code |
| draw_heatmap | Man page Source code |
| example_sample_pair_data | Man page |
| extractRef | Man page Source code |
| extractSeq | Man page Source code |
| extractTyping | Man page Source code |
| getIncompleteTypingPos | Man page Source code |
| getSeqCMP | Man page Source code |
| getSubSeq | Man page Source code |
| getTypingPos | Man page Source code |
| hamming_distance_digit1 | Man page Source code |
| hclustHLA | Man page Source code |
| hladb_protein_3.35.0 | Man page |
| loadHLADb | Man page Source code |
| makeDistanceMatrix | Man page Source code |
| parseAlignment | Man page Source code |
| parseHLADbAlignment | Man page Source code |
| parseSubMatrix | Man page Source code |
| parse_hla_dataset | Man page Source code |
| print.HLADataset | Man page Source code |
| print.HLAMetric | Man page Source code |
| readHLADataset | Man page Source code |
| reduceTypingPos | Man page Source code |
| sample_pair_distance | Man page Source code |
| splitTyping | Man page |
