Files in NCBI-Hackathons/Integrating-HLA-typing-methods-and-RNA-seq
HLA typing clustering and visualization based on specific similarity metrics

.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
HLA-typing_integration.Rproj
LICENSE
NAMESPACE
R/HLAClustRView.R R/HLAdbTools.R R/calculateSimilarity.R R/createCluster.R R/draw_cluster.R R/parseHLADataset.R R/prepareHLAdb.R R/print.HLADataset.R R/print.HLAMetric.R R/splitTyping.R README.md
data/demoHLADataset.RData
data/example_sample_pair_data.rda
data/hladb_protein_3.35.0.RData
inst/extdata/DOB_prot.txt
inst/extdata/DRA_prot.txt
inst/extdata/Samples_HLA_typing.txt
inst/extdata/hladb.txt
man/HLAClustRView-package.Rd man/HLADataset.Rd man/HLAMetric.Rd man/calculateHamming.Rd man/demoHLADataset.Rd man/draw_dendrogram.Rd man/draw_heatmap.Rd man/example_sample_pair_data.Rd man/extractRef.Rd man/extractSeq.Rd man/extractTyping.Rd man/getIncompleteTypingPos.Rd man/getSeqCMP.Rd man/getSubSeq.Rd man/getTypingPos.Rd man/hamming_distance_digit1.Rd man/hclustHLA.Rd man/hladb_protein_3.35.0.Rd man/loadHLADb.Rd man/makeDistanceMatrix.Rd man/parseAlignment.Rd man/parseHLADbAlignment.Rd man/parseSubMatrix.Rd man/parse_hla_dataset.Rd man/readHLADataset.Rd man/reduceTypingPos.Rd man/sample_pair_distance.Rd man/splitTyping.Rd tests/testthat.R tests/testthat/test-HLAdbTools.R tests/testthat/test-calculateSimilarity.R tests/testthat/test-createCluster.R tests/testthat/test-draw_cluster.R tests/testthat/test-parseHLADataset.R tests/testthat/test-prepareHLAdb.R tests/testthat/test-print_HLADataset.R tests/testthat/test-print_HLAMetric.R tests/testthat/test-splitTyping.R
vignettes/HLAClustRViewLogo.png
vignettes/HLAClusterView.Rmd
vignettes/HLAdesign.jpg
vignettes/Hamming_Eqn_01.jpg
vignettes/Hamming_Eqn_02.jpg
vignettes/Samples_HLA_typing.txt
vignettes/biblio.bibtex
vignettes/style.css
NCBI-Hackathons/Integrating-HLA-typing-methods-and-RNA-seq documentation built on Nov. 23, 2019, 1:57 a.m.