hclustHLA: Hierarchical clustering using a HLA typing similarity metric

In NCBI-Hackathons/Integrating-HLA-typing-methods-and-RNA-seq: HLA typing clustering and visualization based on specific similarity metrics

Description

Hierarchical cluster analysis on a set of similarity values related to HLA typing.

Usage

hclustHLA(hlaMetric, method = "complete", ...)

Arguments

hlaMetric	an object of class HLAMetric.
method	a string character string, the agglomeration method to be used for clustering.
...	arguments passed to or from other methods.

Value

an object of class hclust which describes the tree produced by the clustering process. See hclust.

Author(s)

Astrid Deschenes

Examples

## Load example dataset
data(demoHLADataset)

## Calculate Hamming distance metric
hammingDistance <- calculateHamming(demoHLADataset)

## Run clustering
hclustHLA(hammingDistance)

NCBI-Hackathons/Integrating-HLA-typing-methods-and-RNA-seq documentation built on Nov. 23, 2019, 1:57 a.m.