loadHLADb: load HLA Database alignment files for a specific alignment...

Description Usage Arguments Details Value Author(s) Examples

View source: R/prepareHLAdb.R

Description

load HLA Database parse by parseHLADbAlignment

Usage

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loadHLADb(hlaDbFile)

Arguments

hlaDbFile

A character string, the path to the rds file from parseHLADbAlignment. #'

Details

See http://hla.alleles.org/alleles/text_index.html

Value

An object of class HLAdb with 3 entries. The entries are:

Author(s)

Pascal Belleau, Astrid Deschenes

Examples

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## Get path where some HLA database files are stored
##directory <- system.file("extdata", package = "HLAClustRView")

## Parse HLA database files of protein type
##HLAInfo <- loadHLADb(hlaDbFile="")

## Show reference sequences
##HLAInfo$refSeq

NCBI-Hackathons/Integrating-HLA-typing-methods-and-RNA-seq documentation built on Nov. 23, 2019, 1:57 a.m.