Files in NCBI-Hackathons/Integrating-HLA-typing-methods-and-RNA-seq
HLA typing clustering and visualization based on specific similarity metrics
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
HLA-typing_integration.Rproj
LICENSE
NAMESPACE
R/HLAClustRView.R
R/HLAdbTools.R
R/calculateSimilarity.R
R/createCluster.R
R/draw_cluster.R
R/parseHLADataset.R
R/prepareHLAdb.R
R/print.HLADataset.R
R/print.HLAMetric.R
R/splitTyping.R
README.md
data/demoHLADataset.RData
data/example_sample_pair_data.rda
data/hladb_protein_3.35.0.RData
inst/extdata/DOB_prot.txt
inst/extdata/DRA_prot.txt
inst/extdata/Samples_HLA_typing.txt
inst/extdata/hladb.txt
man/HLAClustRView-package.Rd
man/HLADataset.Rd
man/HLAMetric.Rd
man/calculateHamming.Rd
man/demoHLADataset.Rd
man/draw_dendrogram.Rd
man/draw_heatmap.Rd
man/example_sample_pair_data.Rd
man/extractRef.Rd
man/extractSeq.Rd
man/extractTyping.Rd
man/getIncompleteTypingPos.Rd
man/getSeqCMP.Rd
man/getSubSeq.Rd
man/getTypingPos.Rd
man/hamming_distance_digit1.Rd
man/hclustHLA.Rd
man/hladb_protein_3.35.0.Rd
man/loadHLADb.Rd
man/makeDistanceMatrix.Rd
man/parseAlignment.Rd
man/parseHLADbAlignment.Rd
man/parseSubMatrix.Rd
man/parse_hla_dataset.Rd
man/readHLADataset.Rd
man/reduceTypingPos.Rd
man/sample_pair_distance.Rd
man/splitTyping.Rd
tests/testthat.R
tests/testthat/test-HLAdbTools.R
tests/testthat/test-calculateSimilarity.R
tests/testthat/test-createCluster.R
tests/testthat/test-draw_cluster.R
tests/testthat/test-parseHLADataset.R
tests/testthat/test-prepareHLAdb.R
tests/testthat/test-print_HLADataset.R
tests/testthat/test-print_HLAMetric.R
tests/testthat/test-splitTyping.R
vignettes/HLAClustRViewLogo.png
vignettes/HLAClusterView.Rmd
vignettes/HLAdesign.jpg
vignettes/Hamming_Eqn_01.jpg
vignettes/Hamming_Eqn_02.jpg
vignettes/Samples_HLA_typing.txt
vignettes/biblio.bibtex
vignettes/style.css
