API for NCBI-Hackathons/clustifyR
Classifier for Single-cell RNA-seq Using Cell Clusters
| Global functions | |
|---|---|
| append_genes | Man page Source code |
| assess_rank_bias | Man page Source code |
| assign_ident | Man page Source code |
| average_clusters | Man page Source code |
| binarize_expr | Man page Source code |
| build_atlas | Man page Source code |
| calc_distance | Man page Source code |
| calc_similarity | Man page Source code |
| calculate_pathway_gsea | Man page Source code |
| call_consensus | Man page Source code |
| call_to_metadata | Man page Source code |
| cbmc_m | Man page |
| cbmc_ref | Man page |
| check_raw_counts | Man page Source code |
| clustify | Man page Source code |
| clustify.Seurat | Man page Source code |
| clustify.SingleCellExperiment | Man page Source code |
| clustify.default | Man page Source code |
| clustify_lists | Man page Source code |
| clustify_lists.Seurat | Man page Source code |
| clustify_lists.SingleCellExperiment | Man page Source code |
| clustify_lists.default | Man page Source code |
| clustify_nudge | Man page Source code |
| clustify_nudge.Seurat | Man page Source code |
| clustify_nudge.default | Man page Source code |
| clustifyr | Man page |
| clustifyr-package | Man page |
| clustifyr_methods | Man page |
| collapse_to_cluster | Man page Source code |
| compare_lists | Man page Source code |
| cor_to_call | Man page Source code |
| cor_to_call_rank | Man page Source code |
| cor_to_call_topn | Man page Source code |
| cosine | Man page Source code |
| downrefs | Man page |
| downsample_matrix | Man page Source code |
| extract_v4_matrix | Source code |
| extract_v5_matrix | Source code |
| feature_select_PCA | Man page Source code |
| file_marker_parse | Man page Source code |
| find_rank_bias | Man page Source code |
| gene_pct | Man page Source code |
| gene_pct_markerm | Man page Source code |
| get_best_match_matrix | Man page Source code |
| get_best_str | Man page Source code |
| get_common_elements | Man page Source code |
| get_seurat_matrix | Source code |
| get_similarity | Man page Source code |
| get_ucsc_reference | Man page Source code |
| get_unique_column | Man page Source code |
| get_vargenes | Man page Source code |
| gmt_to_list | Man page Source code |
| human_genes_10x | Man page |
| insert_meta_object | Man page Source code |
| is_pkg_available | Source code |
| is_seurat_v5 | Source code |
| kl_divergence | Man page Source code |
| make_comb_ref | Man page Source code |
| marker_select | Man page Source code |
| matrixize_markers | Man page Source code |
| mouse_genes_10x | Man page |
| not_pretty_palette | Man page |
| object_data | Man page Source code |
| object_data.Seurat | Man page Source code |
| object_data.SingleCellExperiment | Man page Source code |
| object_loc_lookup | Man page Source code |
| object_ref | Man page Source code |
| object_ref.Seurat | Man page Source code |
| object_ref.SingleCellExperiment | Man page Source code |
| object_ref.default | Man page Source code |
| overcluster | Man page Source code |
| overcluster_test | Man page Source code |
| parse_loc_object | Man page Source code |
| pbmc_example_data | Source code |
| pbmc_markers | Man page |
| pbmc_markers_M3Drop | Man page |
| pbmc_matrix_small | Man page |
| pbmc_meta | Man page |
| pbmc_vargenes | Man page |
| percent_clusters | Man page Source code |
| permute_similarity | Man page Source code |
| plot_best_call | Man page Source code |
| plot_call | Man page Source code |
| plot_cor | Man page Source code |
| plot_cor_heatmap | Man page Source code |
| plot_dims | Man page Source code |
| plot_gene | Man page Source code |
| plot_pathway_gsea | Man page Source code |
| plot_rank_bias | Man page Source code |
| pos_neg_marker | Man page Source code |
| pos_neg_select | Man page Source code |
| pretty_palette | Man page |
| pretty_palette2 | Man page |
| pretty_palette_ramp_d | Man page |
| query_rank_bias | Man page Source code |
| ref_feature_select | Man page Source code |
| ref_marker_select | Man page Source code |
| reverse_marker_matrix | Man page Source code |
| run_clustifyr_app | Man page Source code |
| run_gsea | Man page Source code |
| sce_pbmc | Man page Source code |
| seurat_meta | Man page Source code |
| seurat_meta.Seurat | Man page Source code |
| seurat_ref | Man page Source code |
| seurat_ref.Seurat | Man page Source code |
| so_pbmc | Man page Source code |
| vector_similarity | Man page Source code |
| write_meta | Man page Source code |
| write_meta.Seurat | Man page Source code |
| write_meta.SingleCellExperiment | Man page Source code |
