find_rank_bias: Find rank bias

In NCBI-Hackathons/clustifyR: Classifier for Single-cell RNA-seq Using Cell Clusters

Find rank bias

Description

Find rank bias

Usage

find_rank_bias(avg_mat, ref_mat, query_genes = NULL)

Arguments

avg_mat	average expression matrix
ref_mat	reference expression matrix
query_genes	original vector of genes used to clustify

Value

list of matrix of rank diff values

Examples

avg <- average_clusters(
    mat = pbmc_matrix_small,
    metadata = pbmc_meta,
    cluster_col = "classified",
    if_log = FALSE
)

rankdiff <- find_rank_bias(
    avg,
    cbmc_ref,
    query_genes = pbmc_vargenes
)

NCBI-Hackathons/clustifyR documentation built on Aug. 31, 2024, 5:35 a.m.