call_to_metadata: Insert called ident results into metadata

In NCBI-Hackathons/clustifyR: Classifier for Single-cell RNA-seq Using Cell Clusters

Insert called ident results into metadata

Description

Insert called ident results into metadata

Usage

call_to_metadata(
  res,
  metadata,
  cluster_col,
  per_cell = FALSE,
  rename_prefix = NULL
)

Arguments

res	dataframe of idents, such as output of cor_to_call
metadata	input metadata with tsne or umap coordinates and cluster ids
cluster_col	metadata column, can be cluster or cellid
per_cell	whether the res dataframe is listed per cell
rename_prefix	prefix to add to type and r column names

Value

new metadata with added columns

Examples

res <- clustify(
    input = pbmc_matrix_small,
    metadata = pbmc_meta,
    cluster_col = "classified",
    ref_mat = cbmc_ref
)

res2 <- cor_to_call(res, cluster_col = "classified")

call_to_metadata(
    res = res2,
    metadata = pbmc_meta,
    cluster_col = "classified",
    rename_prefix = "assigned"
)

NCBI-Hackathons/clustifyR documentation built on Aug. 31, 2024, 5:35 a.m.