exportNifti: Export data in Nifti format
In NHPatterson/Reg3DIMS: Automated registration of sequential 2D IMS for 3D reconstruction in Cardinal
Description
Exports reconstructed 3D arrays which can be opened and visualized in FIJI ImageJ, Slicer or other scientific imaging software. Function writes *.nii files to the current working directory.
Usage
1
exportNifti(ims3d, xyz_um = c(20, 20, 20), name_prefix = "my3d_data")
Arguments
ims3d
combined, processed 3D IMS dataset
xyz_um
spatial resolution information in microns for all three dimensions
name_prefix
character string to be prepended to exported nifty image filenames
NHPatterson/Reg3DIMS documentation built on Oct. 30, 2019, 10:04 p.m.
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Description
Exports reconstructed 3D arrays which can be opened and visualized in FIJI ImageJ, Slicer or other scientific imaging software. Function writes *.nii files to the current working directory.
Usage
1 | exportNifti(ims3d, xyz_um = c(20, 20, 20), name_prefix = "my3d_data")
|
Arguments
ims3d |
combined, processed 3D IMS dataset |
xyz_um |
spatial resolution information in microns for all three dimensions |
name_prefix |
character string to be prepended to exported nifty image filenames |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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