reg3DIMS: Register serial 3D IMS data

In NHPatterson/Reg3DIMS: Automated registration of sequential 2D IMS for 3D reconstruction in Cardinal

Description

This function registers a sequence of 2D images saved as a list of 2D matrices into a 3D reconstruction, returning a list of transformations

Usage

reg3DIMS(reg_images, mid_point = 5, flip_positions = c(),
  flip_type = c())

Arguments

reg_images	list of 2D matrices representing template images
mid_point	depth from which registration should proceed
flip_type	optional, 1 (horizontral) or 2(vertical), length must match length of flip_position
flip_position	optional, depth at which the image is mirror, length must match length of flip_type

Value

named list of NiftyReg transformations per 2D section

NHPatterson/Reg3DIMS documentation built on Oct. 30, 2019, 10:04 p.m.